View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049_low_28 (Length: 251)

Name: NF10049_low_28
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049_low_28
NF10049_low_28
[»] chr7 (5 HSPs)
chr7 (1-99)||(4834424-4834523)
chr7 (159-223)||(29912936-29913000)
chr7 (153-207)||(26247069-26247123)
chr7 (167-219)||(18290923-18290975)
chr7 (156-194)||(29865648-29865686)
[»] chr8 (16 HSPs)
chr8 (159-223)||(16249700-16249764)
chr8 (159-223)||(16312910-16312974)
chr8 (159-223)||(34801177-34801241)
chr8 (177-225)||(16311460-16311508)
chr8 (167-224)||(16221272-16221329)
chr8 (177-225)||(16248247-16248295)
chr8 (177-225)||(34802611-34802659)
chr8 (177-225)||(37249388-37249436)
chr8 (159-223)||(37250829-37250893)
chr8 (167-217)||(18431231-18431281)
chr8 (169-217)||(15342741-15342789)
chr8 (169-217)||(15431806-15431854)
chr8 (169-217)||(15523110-15523158)
chr8 (159-207)||(16311189-16311237)
chr8 (171-219)||(17887626-17887674)
chr8 (159-207)||(37249148-37249196)
[»] chr5 (7 HSPs)
chr5 (159-223)||(8128094-8128158)
chr5 (159-223)||(29865535-29865599)
chr5 (177-218)||(29864091-29864132)
chr5 (159-223)||(4062504-4062568)
chr5 (177-225)||(4063343-4063391)
chr5 (159-223)||(7332601-7332665)
chr5 (159-207)||(29863813-29863861)
[»] chr3 (6 HSPs)
chr3 (159-223)||(19817065-19817129)
chr3 (167-225)||(52752633-52752691)
chr3 (172-223)||(20934675-20934726)
chr3 (167-218)||(52754736-52754787)
chr3 (167-217)||(14240968-14241018)
chr3 (167-207)||(35686153-35686193)
[»] chr2 (3 HSPs)
chr2 (153-217)||(13439003-13439067)
chr2 (169-217)||(45054466-45054514)
chr2 (159-207)||(5786592-5786640)
[»] chr1 (6 HSPs)
chr1 (177-225)||(17001873-17001921)
chr1 (161-225)||(49878699-49878763)
chr1 (177-225)||(34161330-34161378)
chr1 (159-217)||(17006155-17006213)
chr1 (179-217)||(3417504-3417542)
chr1 (169-210)||(31089981-31090022)
[»] chr4 (7 HSPs)
chr4 (156-223)||(55050390-55050457)
chr4 (161-217)||(11793675-11793731)
chr4 (177-225)||(26288212-26288260)
chr4 (159-223)||(26289659-26289723)
chr4 (167-218)||(17449738-17449789)
chr4 (167-225)||(13917824-13917881)
chr4 (177-225)||(55051228-55051276)
[»] chr6 (6 HSPs)
chr6 (159-223)||(23409750-23409814)
chr6 (167-219)||(21055833-21055885)
chr6 (171-225)||(3531708-3531762)
chr6 (160-201)||(9451974-9452015)
chr6 (156-222)||(4791264-4791332)
chr6 (159-207)||(23408001-23408049)
[»] scaffold0169 (1 HSPs)
scaffold0169 (169-210)||(4853-4894)
[»] scaffold0119 (1 HSPs)
scaffold0119 (167-223)||(40939-40995)
[»] scaffold0159 (1 HSPs)
scaffold0159 (159-207)||(30965-31013)
[»] scaffold0021 (1 HSPs)
scaffold0021 (169-217)||(128726-128774)


Alignment Details
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 4834424 - 4834523
Alignment:
Q  1 aagtgaagatggagagtaaattaagagtgtgattgtataaaggatttaggaggggagtggatgatttgc-ttttcttttcgaaattatggatattataac 99  Q
    ||||||||||||| ||||||||||| |||||||||||| || | ||||||| ||| ||| |||| |||| |||| |||| ||||||||||||||||||||    
T  4834424 aagtgaagatggaaagtaaattaagggtgtgattgtatgaaaggtttaggaagggtgtgaatgacttgctttttgtttttgaaattatggatattataac 4834523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 29913000 - 29912936
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  29913000 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 29912936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 26247069 - 26247123
Alignment:
Q  153 catatgattttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||    
T  26247069 catataattttaaatgtctaataaacatgtattttgtcaactcagcataacacat 26247123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 18290923 - 18290975
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttca 219  Q
    ||||||||||||||||||||||| |||||| ||||| |||| |||| ||||||    
T  18290923 tgtctaataaacatgtattttgtaaattcatcataacacatgtacatttttca 18290975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 29865648 - 29865686
Alignment:
Q  156 atgattttaattgtctaataaacatgtattttgtcaatt 194  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  29865648 atgactttaaatgtctaataaacatgtattttgtcaatt 29865686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 16249700 - 16249764
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  16249700 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 16249764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 16312910 - 16312974
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  16312910 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 16312974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 34801241 - 34801177
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  34801241 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 34801177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 16311460 - 16311508
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  16311460 acatgtattttgtcaattcagcataacaaatctacaattttccattgtc 16311508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 16221272 - 16221329
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgt 224  Q
    ||||||||||||||||||||||| || ||||||||| ||||||| | ||||| |||||    
T  16221272 tgtctaataaacatgtattttgtaaactcagcataacacatctatatttttccattgt 16221329  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 16248247 - 16248295
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    ||||||||||| |||||||||||||| | ||||||||||||| ||||||    
T  16248247 acatgtattttttcaattcagcataacaaatctacaattttctattgtc 16248295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 34802659 - 34802611
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    ||||||||||| |||||||||||||| | ||||||||||||| ||||||    
T  34802659 acatgtattttatcaattcagcataacaaatctacaattttctattgtc 34802611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 37249388 - 37249436
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||| | ||||| ||||||| ||||||    
T  37249388 acatgtattttgtcaattcagcataacaaatctataattttctattgtc 37249436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 37250829 - 37250893
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| | ||||||||||||||||||||| || ||| ||||| |||||| |||||||| ||||    
T  37250829 attttaaatatctaataaacatgtattttgtgaactcaacataacacatctgcaattttccattg 37250893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 18431231 - 18431281
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||||| |||||||||||| |  ||| ||||||||||||||||||||    
T  18431231 tgtctaataagcatgtattttgttacctcatcataatacatctacaatttt 18431281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 15342741 - 15342789
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||| | ||||||||||||| ||||||||| |||| |||||||||    
T  15342741 tctaataatcgtgtattttgtcaactcagcataacacatatacaatttt 15342789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 15431806 - 15431854
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||| | ||||||||||||| ||||||||| |||| |||||||||    
T  15431806 tctaataatcgtgtattttgtcaactcagcataacacatatacaatttt 15431854  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 15523110 - 15523158
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||| | ||||||||||||| ||||||||| |||| |||||||||    
T  15523110 tctaataatcgtgtattttgtcaactcagcataacacatatacaatttt 15523158  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 16311189 - 16311237
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  16311189 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 16311237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 17887674 - 17887626
Alignment:
Q  171 taataaacatgtattttgtcaattcagcataatacatctacaattttca 219  Q
    ||||||||||||||||||| |||||| ||||| |||| |||| ||||||    
T  17887674 taataaacatgtattttgtaaattcatcataacacatgtacatttttca 17887626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 37249148 - 37249196
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  37249148 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 37249196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 8128094 - 8128158
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  8128094 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 8128158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 29865535 - 29865599
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||| | |||||||| ||||    
T  29865535 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatatgcaattttccattg 29865599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 29864091 - 29864132
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttc 218  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  29864091 acatgtattttgtcaattcagcataacaaatctacaattttc 29864132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 4062568 - 4062504
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| | ||||||||||||||||||| | || ||||||||| |||||| |||||||| ||||    
T  4062568 attttaaatctctaataaacatgtattttctgaactcagcataacacatctgcaattttctattg 4062504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 4063391 - 4063343
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||  | ||||||||||||| ||||||    
T  4063391 acatgtattttgtcaattcagcatagcaaatctacaattttccattgtc 4063343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 7332601 - 7332665
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||| ||||||||| || ||| ||||| |||||| |||||||| ||||    
T  7332601 attttaaatgtctaataaacacgtattttgtgaactcatcataacacatctgcaattttccattg 7332665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 29863813 - 29863861
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  29863813 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 29863861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 19817065 - 19817129
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  19817065 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 19817129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 52752691 - 52752633
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    ||||||||||||||||||||||| || ||||||||| ||||||| | ||||| ||||||    
T  52752691 tgtctaataaacatgtattttgtaaactcagcataacacatctatatttttccattgtc 52752633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 20934675 - 20934726
Alignment:
Q  172 aataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    |||||| |||||||||||||||||| || |||||||||||| ||||| ||||    
T  20934675 aataaatatgtattttgtcaattcatcaaaatacatctacatttttctattg 20934726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 52754787 - 52754736
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttc 218  Q
    ||||||||||| |||||||||| ||| ||||||||| ||||||||| |||||    
T  52754787 tgtctaataaatatgtattttgccaactcagcataacacatctacatttttc 52754736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 14240968 - 14241018
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||||||||||||||||||||| ||| ||||| || |||||| ||||    
T  14240968 tgtctaataaacatgtattttgtcaactcaacataacacttctacattttt 14241018  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 35686193 - 35686153
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  35686193 tgtctaataaacatgtattttgttaattcatcataacacat 35686153  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 13439003 - 13439067
Alignment:
Q  153 catatgattttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    ||||| ||||||| ||||||||||| |||||||||||  ||||||||||| ||||||||||||||    
T  13439003 catataattttaaatgtctaataaatatgtattttgtttattcagcataacacatctacaatttt 13439067  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 45054466 - 45054514
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||| ||||    
T  45054466 tctaataaacatgtattttgtcaactcaacataacacatctacattttt 45054514  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 5786592 - 5786640
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||||||||||||||||||||||| |||| || |||| ||||    
T  5786592 attttaaatgtctaataaacatgtattttgttaatttagtataacacat 5786640  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 17001873 - 17001921
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  17001873 acatgtattttgtcaattcagcataataaatctacaattttccattgtc 17001921  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 49878763 - 49878699
Alignment:
Q  161 tttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||||||| | |||| |||||||    
T  49878763 tttaattgtctaataaacatgtattttgtaaactcagcataacacatctatattttttaattgtc 49878699  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 34161378 - 34161330
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  34161378 acatgtattttgtcaattcagcataacaaatctacaattttccattgtc 34161330  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 17006155 - 17006213
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    ||||||| ||||||||||||||||||||| | || ||||||||| |||||| |||||||    
T  17006155 attttaaatgtctaataaacatgtattttttgaactcagcataacacatctgcaatttt 17006213  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 3417504 - 3417542
Alignment:
Q  179 atgtattttgtcaattcagcataatacatctacaatttt 217  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  3417504 atgtattttgtcaattcagcataatgcatcaacaatttt 3417542  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 31089981 - 31090022
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatcta 210  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  31089981 tctaataaacatgtattttatcaattcaacataacacatcta 31090022  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 55050457 - 55050390
Alignment:
Q  156 atgattttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    |||||||||| ||||||||||||||||||||| | || ||||||||| |||||| |||||||| ||||    
T  55050457 atgattttaaatgtctaataaacatgtattttctgaactcagcataacacatctgcaattttccattg 55050390  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 11793731 - 11793675
Alignment:
Q  161 tttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    ||||||||||||||||||||||||||||| | |||| ||||| |||||| |||||||    
T  11793731 tttaattgtctaataaacatgtattttgttagttcaacataacacatctgcaatttt 11793675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 26288212 - 26288260
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||| | |||||| |||||| ||||||    
T  26288212 acatgtattttgtcaattcagcataacaaatctacgattttcgattgtc 26288260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 26289659 - 26289723
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||| |||||||||||| |||||| || ||||||||| |||||| |||||||| ||||    
T  26289659 attttaaatgtgtaataaacatgtcttttgtgaactcagcataacacatctgcaattttccattg 26289723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 17449789 - 17449738
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttc 218  Q
    |||||||| ||| ||||||||||||| | |||||||| ||||||||||||||    
T  17449789 tgtctaattaacgtgtattttgtcaacttagcataatgcatctacaattttc 17449738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 13917881 - 13917824
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    ||||||||||||||||||||||| |||||| ||||| |||| ||| |||||| ||||||    
T  13917881 tgtctaataaacatgtattttgttaattcatcataacacatgtac-attttccattgtc 13917824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 55051276 - 55051228
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||| ||||  | ||||||||||||| ||||||    
T  55051276 acatgtattttgtcaattcaacatagcaaatctacaattttccattgtc 55051228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 23409750 - 23409814
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||| ||||| |||||| |||||||| ||||    
T  23409750 attttaaatgtctaataaacatgtattttgtgaactcatcataacacatctgcaattttccattg 23409814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 21055833 - 21055885
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttca 219  Q
    ||||||||||||||||||||||| |||||| ||||| |||| |||| ||||||    
T  21055833 tgtctaataaacatgtattttgttaattcatcataacacatgtacatttttca 21055885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 3531708 - 3531762
Alignment:
Q  171 taataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||| |||||||||||  || ||||| || |||||||||||||||||||    
T  3531708 taataaacatatattttgtcaacccaacataacacttctacaattttcaattgtc 3531762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 9451974 - 9452015
Alignment:
Q  160 ttttaattgtctaataaacatgtattttgtcaattcagcata 201  Q
    |||||| ||||||||||||||||||||||| || ||||||||    
T  9451974 ttttaaatgtctaataaacatgtattttgtgaactcagcata 9452015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 4791264 - 4791332
Alignment:
Q  156 atgattttaa-ttgtctaataaacatgta-ttttgtcaattcagcataatacatctacaattttcaatt 222  Q
    |||||||||| ||||||||||| ||| || ||||||||| ||||||||| ||||| ||||||| |||||    
T  4791264 atgattttaaattgtctaataagcatatatttttgtcaactcagcataagacatcgacaatttacaatt 4791332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 23408001 - 23408049
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  23408001 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 23408049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 4894 - 4853
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatcta 210  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  4894 tctaataaacatgtattttgtcaactcagcataaaacatcta 4853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 40995 - 40939
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||||||||||||||||||| || ||| ||||| |||||| |||||||| ||||    
T  40995 tgtctaataaacatgtattttgtgaactcaacataacacatctgcaattttccattg 40939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 30965 - 31013
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||||||||||||||||||||||| |||| || |||| ||||    
T  30965 attttaaatgtctaataaacatgtattttgttaatttagtataacacat 31013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 128726 - 128774
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    ||||||||||||||||||||||||  || ||||| ||||||||| ||||    
T  128726 tctaataaacatgtattttgtcaaaacatcataacacatctacattttt 128774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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