View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049_low_3 (Length: 615)

Name: NF10049_low_3
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049_low_3
NF10049_low_3
[»] chr7 (2 HSPs)
chr7 (19-610)||(46647175-46647768)
chr7 (466-575)||(9122708-9122814)
[»] chr4 (2 HSPs)
chr4 (434-539)||(55514548-55514648)
chr4 (461-495)||(26393919-26393953)
[»] chr1 (1 HSPs)
chr1 (458-540)||(13361679-13361757)
[»] chr3 (1 HSPs)
chr3 (459-495)||(21853437-21853473)
[»] scaffold0181 (1 HSPs)
scaffold0181 (461-495)||(15846-15880)
[»] chr8 (1 HSPs)
chr8 (119-194)||(20994808-20994883)


Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 19 - 610
Target Start/End: Complemental strand, 46647768 - 46647175
Alignment:
Q  19 acattagcatgttattaatcacacacatatagtaggctgaacccttcgtcttgcttaacgatattttcttaatttttctcctggttcgttgtaacatttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46647768 acattagcatgttattaatcacacacatatagtaggctgaacccttcgtcttgcttaacgacattttcttaatttttctcctggttcgttgtaacatttc 46647669  T
Q  119 ggattgttacgtttctcgtatacatcatgtgctacagggactttagttggtttattaattatttttcttagcctttnnnnnnntacatannnnnnnnnnn 218  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||               
T  46647668 ggattgttaagtttctcgtatacatcatgtgctatagggactttagttggtttattaattatttttcttagcctttaaaaaaatacatattttttttatt 46647569  T
Q  219 nnnnn--atgaatgtttacttttcaaagcgttgagatgactatgtatctttttattaagaacctcactaaatattccacgatccacatgaataagaggaa 316  Q
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  46647568 ttattttatgaatgcttacttttcaaagcgttgagatgactatgtatctttttattaagaacctcacgaaatgttccacgatccacatgaataagaggaa 46647469  T
Q  317 caagatatttaccaagattatcattgttgatatctaagagtgtcactgatttgaacacttacttacgttccaatgaaacattgtgaaagaagaatatcca 416  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46647468 caagatatttaccaagattatcattgttgagatctaagagtgtcactgatctgaacacttacttacgtttcaatgaaacattgtgaaagaagaatatcca 46647369  T
Q  417 ggttctcaaggctgagcttttgaccactaaatcaaattaaaaacacacatttatcatagtctctcaacaccatattattattattccacatcatttttca 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46647368 ggttctcaaggctgagcttttgaccactaaatcaaattaaaaacacacatttatcatagtctctcaacaccatattattattattccacatcatttttca 46647269  T
Q  517 acactatttctttctccttcatgtaacccatcaccaccaacatcaaatctatggttccaattttgttctgtttagccatgtaatccaacgtccg 610  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46647268 acactatttctttctccttcatgtaacccaccaccaccaacatcaaatctatggttccaattttgttctgtttagccatgtaatccaacgtccg 46647175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 466 - 575
Target Start/End: Original strand, 9122708 - 9122814
Alignment:
Q  466 tttatcatagtctctcaacaccatattattattattccacatcatttttcaacactatttctttctccttcatgtaac-ccatcaccaccaacatcaaat 564  Q
    |||||||||||| |||||||| |   ||||||| ||||||| ||| || |||||||| ||||||||||||||||  || ||| ||||| || |||||||     
T  9122708 tttatcatagtccctcaacacta---tattattcttccacaccatcttccaacacta-ttctttctccttcatgccacaccaccaccaacatcatcaaac 9122803  T
Q  565 ctatggttcca 575  Q
    |||| ||||||    
T  9122804 ctattgttcca 9122814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 434 - 539
Target Start/End: Original strand, 55514548 - 55514648
Alignment:
Q  434 ttttgaccactaaatcaaattaaaaacacacatttatcatagtctctcaacaccatattattattattccacatcatttttcaacactatttctttctcc 533  Q
    |||| ||||||||||||||| || | ||||||||||| ||||||||||| ||||||||||||    ||||||| ||| || |||||||| | ||||||||    
T  55514548 ttttaaccactaaatcaaataaagagcacacatttattatagtctctcatcaccatattatt----ttccacaccatcttccaacacta-tcctttctcc 55514642  T
Q  534 ttcatg 539  Q
    ||||||    
T  55514643 ttcatg 55514648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 26393953 - 26393919
Alignment:
Q  461 acacatttatcatagtctctcaacaccatattatt 495  Q
    |||||||||||||||||||||| ||||||||||||    
T  26393953 acacatttatcatagtctctcagcaccatattatt 26393919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 540
Target Start/End: Original strand, 13361679 - 13361757
Alignment:
Q  458 aacacacatttatcatagtctctcaacaccatattattattattccacatcatttttcaacactatttctttctccttcatgt 540  Q
    |||||||||||||||| |||||||||||| |   ||||||| ||| ||| ||| ||||||||||| |||||||||||||||||    
T  13361679 aacacacatttatcatggtctctcaacacta---tattattcttctacaccatctttcaacacta-ttctttctccttcatgt 13361757  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 21853473 - 21853437
Alignment:
Q  459 acacacatttatcatagtctctcaacaccatattatt 495  Q
    |||||||||||||||||||||||| ||||||||||||    
T  21853473 acacacatttatcatagtctctcagcaccatattatt 21853437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 15880 - 15846
Alignment:
Q  461 acacatttatcatagtctctcaacaccatattatt 495  Q
    |||||||||||||||||||||| ||||||||||||    
T  15880 acacatttatcatagtctctcagcaccatattatt 15846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 20994883 - 20994808
Alignment:
Q  119 ggattgttacgtttctcgtatacatcatgtgctacagggactttagttggtttattaat-tatttttcttagccttt 194  Q
    |||| |||| ||| ||| |||||||| ||||||| ||||  ||| |||||||||||||| |||||||||||||||||    
T  20994883 ggatagttaagttcctcttatacatcttgtgctagaggggtttt-gttggtttattaatatatttttcttagccttt 20994808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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