View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049_low_30 (Length: 251)
Name: NF10049_low_30
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 30874352 - 30874286
Alignment:
| Q |
169 |
gaaaactttgagtatatggccggcatagacttgggttcagcatcacaacactttgttcatcgccttc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30874352 |
gaaaactttgagtatatggccggcatagacttgggttcagcatcacaacactttgttcatcgccttc |
30874286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 30874506 - 30874432
Alignment:
| Q |
15 |
ggacactcctaaatctaatactttcttttctatnnnnnnntttataattcctgtttacatataatttaattgttc |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30874506 |
ggacactcctaaatctaatactttcttttctataaaaaattttataattcctgtttacatataatttaattgttc |
30874432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University