View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_low_38 (Length: 241)
Name: NF10049_low_38
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 36563803 - 36563667
Alignment:
| Q |
1 |
agtttggttggagtttttaatgaccagtttgtatgtggtttttattgtttcttctaggtatgactataaacatttaatttcttgtcaatgtctcatcgcc |
100 |
Q |
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| T |
36563803 |
agtttggttggagtttttaatgaccagtttgtatgtggtttttattgtttcttctaggtatgactataaacatttaatttcttgtcaatgtctcatcgcc |
36563704 |
T |
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| Q |
101 |
cttcaccattttttaaggtatgaaatgttatgaaata |
137 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
36563703 |
cttcaccattttttaaggtatgaaatgttatgaaata |
36563667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 36563539 - 36563450
Alignment:
| Q |
136 |
tatgatttaatagataagttaaattagttttacatattctccctaccagatggcatacttttacattgaatcttttctctcacatcctta |
225 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36563539 |
tatgatttaatagataagttaaattagttttaaatattctccctaccagatgacatacttttacattgaatcttttctctcacatcctta |
36563450 |
T |
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