View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_low_4 (Length: 557)
Name: NF10049_low_4
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Complemental strand, 48183912 - 48183489
Alignment:
| Q |
15 |
gatgatgtctttgttattgcaatgctggagcagggataggaacctttctgcattgaaaatgagtttgaatccggtgacacaatacgattcaagctttttg |
114 |
Q |
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| T |
48183912 |
gatgatgtctttgttatcgcaacgctggagtagggataggaacctttctgcattgaaaatgagtttgaatccggtgacacaatacgattcaagctttttg |
48183813 |
T |
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| Q |
115 |
atggacctttcagccaccacgttcacgttttcaaaatcgataaataagtaatgatgttgcgaatgtttatgttttgttataactaggaactctgcattat |
214 |
Q |
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| T |
48183812 |
atggacctttcagccaccacgtttacgttttcaaaatcgataaataagtcatgatgttgcgaatgtttatgttttgttataactaggaactctgcattat |
48183713 |
T |
|
| Q |
215 |
ggttgcttacttttcgtatctatgaacaatgcttctactttgttatttcccttgatttgctcatttgtggccaatgcttctattatgttattttccttaa |
314 |
Q |
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| T |
48183712 |
ggttgcttacttttcgtatctatgaacaatgcttctactttgttatttcccttgatttgctcatttgtggccaatgcttcgattatgttatttctcttaa |
48183613 |
T |
|
| Q |
315 |
tttgttcaagtgtgaaggatgcttctatttctttatgttgaagtataattaaaaaatgtattttacttgctattctattctttttcgtttataagcctgt |
414 |
Q |
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| T |
48183612 |
tttgttcaagtgtgaaggatgcttctatttctttatgttgaagtataattaaaaaatgtattttatttgctattctattcttttttgtttataagcctgt |
48183513 |
T |
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| Q |
415 |
gaatttgacagtttaacgttttag |
438 |
Q |
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| T |
48183512 |
gaatttgacagtttaacattttag |
48183489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 20266424 - 20266531
Alignment:
| Q |
42 |
gagcagggataggaacctttctgcattgaaaatgagtttgaatccggtgacacaatacgattcaagctttttgatggacctttcagccaccacgttcacg |
141 |
Q |
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||||| |||| |||||||||||||| ||||||| | |||| ||||||||| | |||| |||||||||| ||||||||||||||||||||| ||||||| | |
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| T |
20266424 |
gagcatggatgggaacctttctgcactgaaaataaatttgtatccggtgataaaatatgattcaagctctttgatggacctttcagccactacgttcatg |
20266523 |
T |
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| Q |
142 |
ttttcaaa |
149 |
Q |
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|||||||| |
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| T |
20266524 |
ttttcaaa |
20266531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 20249725 - 20249821
Alignment:
| Q |
102 |
ttcaagctttttgatggacctttcagccaccacgttcacgttttcaaaatcgataaataagtaatgatgttgcgaatgtttatgttttgttataact |
198 |
Q |
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| T |
20249725 |
ttcaagctctttgatggacctttcagccactaagttcatgttttcaaagtagatggttaggtcttaatgttgcgaatgattctgttttgtaataact |
20249821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 20249953 - 20250005
Alignment:
| Q |
385 |
tattctattctttttcgtttataagcctgtgaatttgacagtttaacgtttta |
437 |
Q |
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| T |
20249953 |
tattctcttctttttagtttataaacatgtgaatttgacagtttatcgtttta |
20250005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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