View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049_low_48 (Length: 224)

Name: NF10049_low_48
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049_low_48
NF10049_low_48
[»] chr7 (14 HSPs)
chr7 (48-211)||(22875569-22875732)
chr7 (48-207)||(22888943-22889102)
chr7 (48-157)||(22885326-22885435)
chr7 (48-159)||(22913373-22913484)
chr7 (48-159)||(22814726-22814837)
chr7 (48-147)||(22880302-22880401)
chr7 (48-147)||(22805029-22805128)
chr7 (48-157)||(22809342-22809451)
chr7 (48-157)||(22858160-22858269)
chr7 (48-157)||(22830732-22830841)
chr7 (48-157)||(22839753-22839862)
chr7 (84-165)||(22897965-22898046)
chr7 (84-157)||(22893654-22893727)
chr7 (48-164)||(22825952-22826068)
[»] chr1 (1 HSPs)
chr1 (48-157)||(21150904-21151013)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 22875732 - 22875569
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22875732 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 22875633  T
Q  148 cgaacttcctaaactacctgcagagnnnnnnnngtcgaaatttttaactgttggattgcctttg 211  Q
     ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  22875632 tgaacttcctaaactacctgcagagaaaaaaaagtcgaaatttttaactgttggattgcctttg 22875569  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 22889102 - 22888943
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    ||||||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22889102 atgttggattctcatcttcaacagggttaatggtagcttctcagtatattcttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc 22889003  T
Q  148 cgaacttcctaaactacctgcagagnnnnnnnngtcgaaatttttaactgttggattgcc 207  Q
     ||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  22889002 tgaacttcctaaactacctgcagagaaaaaaaagtcgaaatttttaactgttggattgcc 22888943  T

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Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 22885435 - 22885326
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||    
T  22885435 atgttggattctcatcttcaacagggttaattgtagcttctcattatattcttggttggagttttaaggttaatagccaagctcaaaaccttgaaatctc 22885336  T
Q  148 cgaacttcct 157  Q
     |||||||||    
T  22885335 tgaacttcct 22885326  T

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Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 22913484 - 22913373
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  22913484 atgttggattctcatcttcaacaggttcaattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctc 22913385  T
Q  148 cgaacttcctaa 159  Q
     |||||||||||    
T  22913384 tgaacttcctaa 22913373  T

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Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 22814837 - 22814726
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||| ||    
T  22814837 atgttggattctcatcttcaacagggttacttgtagcttctcattatattcttgggtggagttttaaggttaatggccaagctcaaaaccttgaaatatc 22814738  T
Q  148 cgaacttcctaa 159  Q
     |||||||||||    
T  22814737 tgaacttcctaa 22814726  T

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Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 22880401 - 22880302
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22880401 atgttggattatcatcttcaacaaggttaattttagcttctcattatgttcttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc 22880302  T

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Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 22805128 - 22805029
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    ||||||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  22805128 atgttggattctcatcttcaacagggttacttgcagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaaccttgtaatctc 22805029  T

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Target: chr7; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 22809451 - 22809342
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    |||||||||||||||||||||||||||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  22809451 atgttggattctcatcttcaacaggttctattctatcttctcattatgttcttggttggagttttaaggttaatggtcaagctcaaaaccttgatatctc 22809352  T
Q  148 cgaacttcct 157  Q
      ||||||||    
T  22809351 taaacttcct 22809342  T

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Target: chr7; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 22858269 - 22858160
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    |||||||||||||||||||||| ||  ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  22858269 atgttggattctcatcttcaaccggggtaattgtagcttcccattatattcttggttggagttttaaggttaatggccaagctcaaaaccttgaaatctc 22858170  T
Q  148 cgaacttcct 157  Q
      ||||||||    
T  22858169 taaacttcct 22858160  T

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Target: chr7; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 22830841 - 22830732
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    ||||||||||||||||||||||||| || |||  ||||||||||||||||| |||||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  22830841 atgttggattctcatcttcaacagggttcattgcagcttctcattatattcatggttggagttttatggttaatggccaatctcaaaaccttgaaatctc 22830742  T
Q  148 cgaacttcct 157  Q
     || ||||||    
T  22830741 tgaccttcct 22830732  T

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Target: chr7; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 22839862 - 22839753
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    ||||||||||||||||||||||||| || |||  ||||||||||||||||| |||||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  22839862 atgttggattctcatcttcaacagggttcattgcagcttctcattatattcatggttggagttttatggttaatggccaatctcaaaaccttgaaatctc 22839763  T
Q  148 cgaacttcct 157  Q
     || ||||||    
T  22839762 tgaccttcct 22839753  T

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Target: chr7; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 22898046 - 22897965
Alignment:
Q  84 cttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctccgaacttcctaaactacc 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||| |||||    
T  22898046 cttctcattatattcttggttggagttttaaggttaatggtcaagctgaaaaccttgtaatctctgaacttcctaagctacc 22897965  T

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Target: chr7; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 22893727 - 22893654
Alignment:
Q  84 cttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctccgaacttcct 157  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| |||||||||    
T  22893727 cttctcattatattcttggttggagttttaagattaatggtcaagctcaaaaccttgtaatctctgaacttcct 22893654  T

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Target: chr7; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 22826068 - 22825952
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    ||||||||||||||||  | || |||| | ||||  |||||||||||||||||||||| ||||||||| ||||||||||||||||||  |||| ||| ||    
T  22826068 atgttggattctcatcagctactggttcagttttcacttctcattatattcttggttgaagttttaagcttaatggtcaagctcaaaatcttgtaatttc 22825969  T
Q  148 cgaacttcctaaactac 164  Q
     ||||||||||||||||    
T  22825968 tgaacttcctaaactac 22825952  T

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Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 21150904 - 21151013
Alignment:
Q  48 atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc 147  Q
    ||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||||||||| |  ||||||| ||||||||||||    
T  21150904 atgttggattctcatcttcaacagggttacttgcagcttctcattatattcttggttggagttttaaggttaatggcctggctcaaaaccttgaaatctc 21151003  T
Q  148 cgaacttcct 157  Q
     |||||||||    
T  21151004 tgaacttcct 21151013  T

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