View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_low_49 (Length: 220)
Name: NF10049_low_49
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 3092001 - 3091813
Alignment:
| Q |
17 |
accattatggtcaaagattgtacctccaaccttagtcccatgaatatgatcataagtaaagccattgtaaggcaacacacctacttccaataatccatct |
116 |
Q |
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| T |
3092001 |
accattatggtcaaagattgtacctccaaccttagtcccatgaatatgatcataagtaaagccattgtaaggcaacacacctacttccaataatccatct |
3091902 |
T |
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| Q |
117 |
ctaactgctgattgccattgacgcataggaggccggaaagccaccactctctccacccatttatatgattcatccactaacttttcatc |
205 |
Q |
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| T |
3091901 |
ctaactgctgattgccattgacgcataggaggctgaaaagccaccactctctccacccatttatatgattcatccactaacttttcatc |
3091813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 3083561 - 3083373
Alignment:
| Q |
17 |
accattatggtcaaagattgtacctccaaccttagtcccatgaatatgatcataagtaaagccattgtaaggcaacacacctacttccaataatccatct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3083561 |
accattatggtcaaagattgtacctccaaccttagtcccatgaatgtgatcataagtaaagccattgtaaggcaacacacctacttccaataatccatct |
3083462 |
T |
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| Q |
117 |
ctaactgctgattgccattgacgcataggaggccggaaagccaccactctctccacccatttatatgattcatccactaacttttcatc |
205 |
Q |
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| T |
3083461 |
ctaactgctgattgccattgacgcatagagggccgaaaagccaccactctctccacccatttatatgattcattcactaactttccatc |
3083373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 45945194 - 45945085
Alignment:
| Q |
33 |
attgtacctccaaccttagtcccatgaatatgatcataagtaaagccattgtaaggcaacacacctacttccaataatccatctctaactgctgattgcc |
132 |
Q |
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||||| ||||||||||||||||||| | ||||||| | ||||| || ||||||||||| | ||| |||| | ||| || || |||||||||||||||| |
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| T |
45945194 |
attgtccctccaaccttagtcccatatacatgatcaaatgtaaaaccgttgtaaggcaaaatccctgcttcaagtaaaccgtccctaactgctgattgcc |
45945095 |
T |
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| Q |
133 |
attgacgcat |
142 |
Q |
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||||| |||| |
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| T |
45945094 |
attgaagcat |
45945085 |
T |
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