View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049_low_6 (Length: 496)

Name: NF10049_low_6
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049_low_6
NF10049_low_6
[»] chr6 (1 HSPs)
chr6 (52-492)||(8159034-8159474)
[»] chr4 (3 HSPs)
chr4 (210-420)||(18701668-18701878)
chr4 (440-492)||(18701878-18701930)
chr4 (177-210)||(18701618-18701651)
[»] chr3 (2 HSPs)
chr3 (127-405)||(4084080-4084374)
chr3 (441-492)||(4084389-4084440)
[»] chr8 (15 HSPs)
chr8 (127-405)||(44312207-44312489)
chr8 (127-399)||(44301308-44301596)
chr8 (219-404)||(43896073-43896255)
chr8 (213-399)||(44306520-44306704)
chr8 (33-124)||(44312081-44312172)
chr8 (23-124)||(43895789-43895890)
chr8 (23-121)||(44306213-44306313)
chr8 (441-492)||(43896271-43896322)
chr8 (441-492)||(44312504-44312555)
chr8 (297-383)||(43895619-43895705)
chr8 (12-65)||(44301178-44301230)
chr8 (42-119)||(44305709-44305785)
chr8 (84-122)||(44301233-44301271)
chr8 (297-383)||(44306043-44306129)
chr8 (74-119)||(43895316-43895361)
[»] chr7 (1 HSPs)
chr7 (299-342)||(15040305-15040348)


Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 52 - 492
Target Start/End: Complemental strand, 8159474 - 8159034
Alignment:
Q  52 aaatgttaaacttaagaatcaaatagataatattgacagcagagataggatcaagtgttaaatgcagaacacagtatcaataattaagcaacagattcac 151  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8159474 aaatgttaaacttaagaatcaaatagataatattgacaacagagataggatcaagtgttaaatgcagaacacagtatcaataattaagcaacagattcag 8159375  T
Q  152 cataaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaattatttctctagaatgaatcaattcacaccatttgaaaatt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159374 cataaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaattatttctctagaatgaatcaattcacaccatttgaaaatt 8159275  T
Q  252 tctctccacgatcttttgagaccgaataagcaggatcatcggcagcagaagtcattatatatctaacagacccatcggtaaaagtatctccagattcaag 351  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159274 tctctccacaatcttttgagaccgaataagcaggaacatcagcagcagaagtcattatatatctaacagacccatcggtaaaagtatctccagattcaag 8159175  T
Q  352 atgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttccttgatttcattaacttcctcactctcatcatgttcgcgtctcttaccc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||    
T  8159174 atgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttccttgattttatcaacttcctcactctcatcatgttcacgtctcttaccc 8159075  T
Q  452 aaacgaggaatctcaatcttcttacccgtgttaacatttgt 492  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  8159074 aaacgaggaatctcaatcttcttaccagtgttaacatttgt 8159034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 210 - 420
Target Start/End: Original strand, 18701668 - 18701878
Alignment:
Q  210 attatttctctagaatgaatcaattcacaccatttgaaaatttctctccacgatcttttgagaccgaataagcaggatcatcggcagcagaagtcattat 309  Q
    ||||||||||||||||||||||||||||||||||||||||| | |  ||   ||||||||||||||||||||||||| ||||   ||||||||||||| |    
T  18701668 attatttctctagaatgaatcaattcacaccatttgaaaatgtatgcccggaatcttttgagaccgaataagcaggaacatc---agcagaagtcattgt 18701764  T
Q  310 atatctaacagacccat---cggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttccttg 406  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  18701765 atatctaacagacccattggcggtaaaagtatctccagattcaagatgagcatcaaaaacaaaaacaatttctccagcatgagcttcatcaacttcctcg 18701864  T
Q  407 atttcattaacttc 420  Q
    |||| |||||||||    
T  18701865 attttattaacttc 18701878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 492
Target Start/End: Original strand, 18701878 - 18701930
Alignment:
Q  440 cgtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 492  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  18701878 cgtctcttgcccaaacgaggaatctgaatcttcttaccagtgttaacatttgt 18701930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 18701618 - 18701651
Alignment:
Q  177 aacaaaccattgcaaagctaataaaccaaaccaa 210  Q
    ||||||||||||||||||||||||||||||||||    
T  18701618 aacaaaccattgcaaagctaataaaccaaaccaa 18701651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 127 - 405
Target Start/End: Original strand, 4084080 - 4084374
Alignment:
Q  127 atcaataattaagcaacagattcaccataaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaatt-------------a 213  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | |||||||| || ||||||||| |             |    
T  4084080 atcaataattaagcaacaaattcaccataaaaaataagttataaataagcaacaaaccatagtaaagctaacaagccaaaccaactggtaagtaggatca 4084179  T
Q  214 tttctctagaatgaatcaattcacaccatttgaaaatttctctccacgatcttttgagaccgaataagcaggatcatcggcagcagaagtcattatatat 313  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||   ||| ||||||||||||||||||||| |||||   |||||||||||| |||||    
T  4084180 tttctctggaatgaatccattcacaccatttgaaaatttctctcctgaatcctttgagaccgaataagcaggaacatcg---gcagaagtcattgtatat 4084276  T
Q  314 ctaacagacccatcggtaaaagtatctccagattcaagatgagcatca------aacacaaaaacaatttctccagcatgagcttcatcaacttcctt 405  Q
    |||| |||||| || ||||||||||||||||||| ||||  |||||||      ||||||| ||||| ||||||||||||||||||||||||| ||||    
T  4084277 ctaatagacccgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttctccagcatgagcttcatcaactgcctt 4084374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 492
Target Start/End: Original strand, 4084389 - 4084440
Alignment:
Q  441 gtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 492  Q
    ||||||||  |||||||||||||| |||||||||||| ||||||||||||||    
T  4084389 gtctcttaaacaaacgaggaatcttaatcttcttaccggtgttaacatttgt 4084440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 127 - 405
Target Start/End: Original strand, 44312207 - 44312489
Alignment:
Q  127 atcaataattaagcaacagattcaccataaaaaa-taagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaatt------------- 212  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||  ||| || ||| || ||||||||| |                 
T  44312207 atcaataattaagcaacaaattcaccataaaaaaataagttataaataagcaacaaaccaaagcatagttaacaagccaaaccaactggcgaagtaggat 44312306  T
Q  213 -atttctctagaatgaatcaattcacaccatttgaaaatttctctccacgatcttttgagaccgaataagcaggatcatcggcagcagaagtcattatat 311  Q
     | |||||| ||||||||| ||||||||||||||||||||||||||||  | |||||||||| ||        || |||||||||   ||||||||||||    
T  44312307 caattctcttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagacgga--------gaacatcggcag---aagtcattatat 44312395  T
Q  312 atctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttcctt 405  Q
    |||||||||||||||| ||||||||||||||||||  ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44312396 atctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaacacaaaaacaatttctccagcatgagcttcatcaacttcctt 44312489  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 127 - 399
Target Start/End: Original strand, 44301308 - 44301596
Alignment:
Q  127 atcaataattaagcaacagattcaccataaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaatt-------------- 212  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||| |||||||||| || |||||| || |                  
T  44301308 atcaataattaagcagcagatttaccataaaaaataagttataaataagcaacaaaacatagcaaagctaacaagccaaacaaactgggtaagtaggatc 44301407  T
Q  213 atttctctagaat-----gaatcaattcacaccatttgaaaatttctctccacgatcttttgagaccgaataagcaggatcatcggcagcagaagtcatt 307  Q
    ||||| || ||||     ||||||||||||||||||||||||||||||||||  ||||||||| |||||||||| |||| |||||   ||||||| ||||    
T  44301408 atttcactggaatggaatgaatcaattcacaccatttgaaaatttctctccagaatcttttgacaccgaataagtaggaacatcg---gcagaagacatt 44301504  T
Q  308 atatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaac 399  Q
     ||||||||||||||||||| ||||||||||||||||||| ||||  |  | | ||||||| |||||||||||| |||||||||||||||||    
T  44301505 gtatatctaacagacccatcagtaaaagtatctccagatttaagaacaatagctaacacaataacaatttctccggcatgagcttcatcaac 44301596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 219 - 404
Target Start/End: Original strand, 43896073 - 43896255
Alignment:
Q  219 ctagaatgaatcaattcacaccatttgaaaatttctctccacgatcttttgagaccgaataagcaggatcatcggcagcagaagtcattatatatctaac 318  Q
    |||||||||||| || |||||||||||||||||||||||||  ||||| |||||  |||||| ||||| |||||||||   |||||||| ||||||||||    
T  43896073 ctagaatgaatccatccacaccatttgaaaatttctctccagaatcttatgagatagaataatcaggaacatcggcag---aagtcattgtatatctaac 43896169  T
Q  319 agacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttcct 404  Q
    ||||||||| || |||||||||||||||| ||||  |||||| ||||||| || ||| ||||||||||||||||||||||||||||    
T  43896170 agacccatcagtgaaagtatctccagatttaagaatagcatctaacacaataataatctctccagcatgagcttcatcaacttcct 43896255  T

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Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 213 - 399
Target Start/End: Original strand, 44306520 - 44306704
Alignment:
Q  213 atttctctagaatgaatcaattcacaccatttgaaaatt-tctctccacgatcttttgagaccgaataagcaggatcatcggcagcagaagtcattatat 311  Q
    ||||| |||||||||||| ||||||||||||||||||   ||||||||  ||||| |||||| ||||||| |||| |||||||||   |||||||| |||    
T  44306520 atttccctagaatgaatccattcacaccatttgaaaaaactctctccagaatcttatgagacagaataagtaggaacatcggcag---aagtcattgtat 44306616  T
Q  312 atctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaac 399  Q
    |||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||  | ||||||||||||||||||||||||||||||    
T  44306617 atctaacagacccatcagtaaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagcatgagcttcatcaac 44306704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 44312081 - 44312172
Alignment:
Q  33 ttaacatgacatttacactaaatgttaaacttaagaatcaaatagataatattgacagcagagataggatcaagtgttaaatgcagaacaca 124  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  44312081 ttaacatgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaatgcagaacaca 44312172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 43895789 - 43895890
Alignment:
Q  23 ggatcaagtcttaacatgacatttacactaaatgttaaacttaagaatcaaatagataatattgacagcagagataggatcaagtgttaaatgcagaaca 122  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||||||    
T  43895789 ggatcaagtcttaacatgacatttgcactaaatgttaaacttatgaatcacatagacaatcttgacggcagagataggatcaggtgttaaatgcagaaca 43895888  T
Q  123 ca 124  Q
    ||    
T  43895889 ca 43895890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 44306213 - 44306313
Alignment:
Q  23 ggatcaagtcttaacatgacatttacactaaatgttaaacttaagaatcaaatagataatattgacagc--agagataggatcaagtgttaaatgcagaa 120  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||  |||||||||||||||||||||||||||||    
T  44306213 ggatcaagtcttaacatgacatttgcactaaatgttaaacttaagaatcacatagacaatcttgacagcagagagataggatcaagtgttaaatgcagaa 44306312  T
Q  121 c 121  Q
    |    
T  44306313 c 44306313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 492
Target Start/End: Original strand, 43896271 - 43896322
Alignment:
Q  441 gtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 492  Q
    ||||||||  |||||||||||||| |||||||||||| ||||||||||||||    
T  43896271 gtctcttaaacaaacgaggaatctgaatcttcttaccagtgttaacatttgt 43896322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 492
Target Start/End: Original strand, 44312504 - 44312555
Alignment:
Q  441 gtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 492  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||| |||||    
T  44312504 gtctcttacccaaacaaggaatcttaatcttcttaccagtgttaacgtttgt 44312555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 43895619 - 43895705
Alignment:
Q  297 cagaagtcattatatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccag 383  Q
    |||| ||||||  |||||||||||||||||| | |||||||||||||||||||   | |||| ||||||||  |||||||| |||||    
T  43895619 cagaggtcattgaatatctaacagacccatcagcaaaagtatctccagattcacactcagcaccaaacacagcaacaatttgtccag 43895705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 44301178 - 44301230
Alignment:
Q  12 atcagtatgaaggatcaagtcttaacatgacatttacactaaatgttaaactta 65  Q
    ||||||||| |||||||| ||||| |||||||||| ||||||||||||||||||    
T  44301178 atcagtatggaggatcaaatctta-catgacatttgcactaaatgttaaactta 44301230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 44305709 - 44305785
Alignment:
Q  42 catttacactaaatgttaaacttaagaatcaaatagataatattgacagcagagataggatcaagtgttaaatgcaga 119  Q
    ||||||||||||  || ||||||  |||||| ||||||| | |||||||||||||| ||||||| |||||||||||||    
T  44305709 catttacactaaccgtcaaacttt-gaatcacatagatattcttgacagcagagatgggatcaattgttaaatgcaga 44305785  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 44301233 - 44301271
Alignment:
Q  84 ttgacagcagagataggatcaagtgttaaatgcagaaca 122  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  44301233 ttgacagcatagataggatcaagtattaaatgcagaaca 44301271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 44306043 - 44306129
Alignment:
Q  297 cagaagtcattatatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccag 383  Q
    |||| ||||||  ||||||||| |||||||| | |||||||||||||||||||   | |||| ||||||||  |||||||| |||||    
T  44306043 cagaggtcattgaatatctaacggacccatcagcaaaagtatctccagattcacactcagcaccaaacacagcaacaatttgtccag 44306129  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 43895316 - 43895361
Alignment:
Q  74 atagataatattgacagcagagataggatcaagtgttaaatgcaga 119  Q
    ||||||| | |||||||||||||||| ||||| |||||||||||||    
T  43895316 atagatattcttgacagcagagatagtatcaattgttaaatgcaga 43895361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 15040305 - 15040348
Alignment:
Q  299 gaagtcattatatatctaacagacccatcggtaaaagtatctcc 342  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||    
T  15040305 gaagtcattgtatatttaacagacccatcagtaaaagtatctcc 15040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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