View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_low_8 (Length: 416)
Name: NF10049_low_8
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 50222411 - 50222640
Alignment:
| Q |
1 |
agaaaagatttttaaaccatgcagcgattctgcctactagcatatgtagatataatcttacatcatggcaatcaagtttagttcttaatatgagctagtg |
100 |
Q |
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| T |
50222411 |
agaaaagatttttaaaccatgcagcgattctgcctactagcacatgtagatataatcttacatcatggcaatcaagtttagttcttaatatgagctagtg |
50222510 |
T |
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| Q |
101 |
cacgggcaatgtctggagttgtgagaatttaggttggggacttgcctatctgtgcagaatcttagagaatgcaaagttattcttatcttttgtttttcaa |
200 |
Q |
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| T |
50222511 |
cacgggcaatgtctggagttgtgagaatttaggttggggacttgcctatctgtgcagaatcttagagaatgcaaagttattcttatcttttgtttttcaa |
50222610 |
T |
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| Q |
201 |
tcaaaactgtaaatatttattttcaagtga |
230 |
Q |
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| T |
50222611 |
tcaaaactgtaaatatttattttcaagtga |
50222640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 230 - 399
Target Start/End: Original strand, 50222720 - 50222889
Alignment:
| Q |
230 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
329 |
Q |
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| T |
50222720 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
50222819 |
T |
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| Q |
330 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatctt |
399 |
Q |
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| T |
50222820 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatctt |
50222889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 50222380 - 50222410
Alignment:
| Q |
9 |
tttttaaaccatgcagcgattctgcctacta |
39 |
Q |
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| T |
50222380 |
tttttaaaccatgcagcgattctgcctacta |
50222410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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