View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_low_9 (Length: 403)
Name: NF10049_low_9
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 33163644 - 33164033
Alignment:
| Q |
1 |
gcaactatggcacaagcaaaagcatatttgttgaacgtgttcgtttgatcttctttgtcaccttgatttattatcatga---tgatgatgatggttaaag |
97 |
Q |
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| T |
33163644 |
gcaactatggcacaagcaaaagcatatttgttgaacgtgttcgtttgatcttctttgtcaccttgatttattatcatgatgatgatgatgatggttaaag |
33163743 |
T |
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| Q |
98 |
gctttcttttctctttctctcttgctagaaatttcaaacccctcaacgtgtttatataagagtatatgttgaggtctaattgggtgaatatataggtaaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33163744 |
gctttcttttctctttctctcttgctagaaatttcaaacccctcaacgtgtttatataagagtatatgttgaggtctaattgggtgaatatataggtaaa |
33163843 |
T |
|
| Q |
198 |
gatactttgttgggtaggttgatagtcctataccgaaaattaaaagagacacataaatgacgggagtaattaaaagagaatgataaaatatctcaagagg |
297 |
Q |
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| T |
33163844 |
gatactttgttgggtaggttgatagtactataccgaaaattaaaagagacacataaatgacgggagtaattaaaagagaatgataaaatatctcaagagt |
33163943 |
T |
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| Q |
298 |
gaaatttattaggcttaaatttggtaggttaaagaatcaaaaaccaattaggagtgttgagggtatttgttcaagatttatatagattgt |
387 |
Q |
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| T |
33163944 |
gaaatttattaggcttaaatttggtaggttaaagaatcaaaaaccaattaggagtgttgagggtatttgttcaagatttatatagattgt |
33164033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31989970 - 31990003
Alignment:
| Q |
1 |
gcaactatggcacaagcaaaagcatatttgttga |
34 |
Q |
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| T |
31989970 |
gcaacaatggcacaagcaaaagcatatttgttga |
31990003 |
T |
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