View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10050_1 (Length: 624)
Name: NF10050_1
Description: NF10050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10050_1 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-138; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 332 - 597
Target Start/End: Original strand, 6206322 - 6206587
Alignment:
| Q |
332 |
gaatcagtttcaaattgtaggatgtttttctaatctcggacataggttaataatcagtttcggtggtgaagttccatagtgtatcctgcctttgcacacg |
431 |
Q |
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| T |
6206322 |
gaatcagtttcaaattgtaggatgtttatctaatctcggacataggttaataaccagtttcggtggtgaagttccatagtgtatcctgcctttgcacacg |
6206421 |
T |
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| Q |
432 |
atcttcaattgtggtaaatcccacaacaacaatttggtcaacttgggaagtgcaatgcttgaagtactgtcttcttcatcacagttgctcactgaaaata |
531 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6206422 |
atcttcaattgtggtaaatcccacaacaacaatttggtcaacttgggaagtgcaatgcttgaagtactgtcttcttcatcacatttgctcactgaaaata |
6206521 |
T |
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| Q |
532 |
tctctttcattgatttacaatgagatacggatattttctccagatttcgaagtccttgaactaatg |
597 |
Q |
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| T |
6206522 |
tctctttcattgatttacaatgagatacggatattttctccagattttgaagtccttgaactaatg |
6206587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 354 - 597
Target Start/End: Original strand, 6232762 - 6233005
Alignment:
| Q |
354 |
tgtttttctaatctcggacataggttaataatcagtttcggtggtgaagttccatagtgtatcctgcctttgcacacgatcttcaattgtggtaaatccc |
453 |
Q |
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| T |
6232762 |
tgtttatctaatctcggacataggttaataaccagtttcggtagagaagttccacagcgtatactgcctttgcacacgatcttcaattgtggtaaatccc |
6232861 |
T |
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| Q |
454 |
acaacaacaatttggtcaacttgggaagtgcaatgcttgaagtactgtcttcttcatcacagttgctcactgaaaatatctctttcattgatttacaatg |
553 |
Q |
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| T |
6232862 |
acaacaataatttggtcaacttgggaagtgcaatgcttgaagtactgtcttcgtcatcacagttgctcactgaaaatatctctttcattgatttacaata |
6232961 |
T |
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| Q |
554 |
agatacggatattttctccagatttcgaagtccttgaactaatg |
597 |
Q |
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| T |
6232962 |
gcatacagacatttcctccagatttcgaagtccttgaactaatg |
6233005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 6206131 - 6206257
Alignment:
| Q |
85 |
agaaaagcttcagaacaacataacaacatggctgaatagaaaaataaaattagactagttagagagtatcccaattcccaacacataaacgcattcttgc |
184 |
Q |
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| T |
6206131 |
agaaaagcttcagaacaacataacaacatggctgaataaaaaaataaaattagactagttagagagta-------tcccaacacataaacgcattcttgc |
6206223 |
T |
|
| Q |
185 |
tcgaaccgaatacaacttgtaccattgataggta |
218 |
Q |
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| T |
6206224 |
tcgaactgaatacaacttgtaccattgataggta |
6206257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 6206257 - 6206312
Alignment:
| Q |
250 |
aagtagtttgatattattttttacaaattgaacttcaaaatgtagataagcattaa |
305 |
Q |
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| T |
6206257 |
aagtagtttgatattattttttacaaattgaacttcaaaatgtagataagcattaa |
6206312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 394 - 595
Target Start/End: Original strand, 6087263 - 6087461
Alignment:
| Q |
394 |
gtggtgaagttccatagtgtatcctgcctttgcacacgatcttcaattgtggtaaatcccacaacaacaatttggtcaacttgggaagtgcaatgcttga |
493 |
Q |
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||||||||| |||| || |||| ||||||||| | || ||||||||||||||||||| ||||| |||| | |||||||| ||||||| |||||| || |
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| T |
6087263 |
gtggtgaagatccacagcgtatactgcctttgtaaacaatcttcaattgtggtaaattgtacaactccaatgtcgtcaacttcggaagtgtaatgctgga |
6087362 |
T |
|
| Q |
494 |
agtactgtcttcttcatcacagttgctcactgaaaatatctctttcattgatttacaatgagatacggatattttctccagatttcgaagtccttgaact |
593 |
Q |
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| T |
6087363 |
---actttcatcatcatcattgttgctcattgcaaatatctctttcattgaattacaatactttacggatatcgtctctagattttgaagttgttgaact |
6087459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 6206024 - 6206070
Alignment:
| Q |
30 |
agtaaacatttcttgcagctatctagtgctggaggctttctaaagca |
76 |
Q |
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| T |
6206024 |
agtaaacatttcttgcagctatctagtgctggaggctttctaaagca |
6206070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 450
Target Start/End: Original strand, 6103989 - 6104027
Alignment:
| Q |
412 |
gtatcctgcctttgcacacgatcttcaattgtggtaaat |
450 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
6103989 |
gtatgctgcctttgcacacgatcttcaattgtggtaaat |
6104027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 596
Target Start/End: Original strand, 6175774 - 6175863
Alignment:
| Q |
507 |
tcatcacagttgctcactgaaaatatctctttcattgatttacaatgagatacggatattttctccagatttcgaagtccttgaactaat |
596 |
Q |
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| T |
6175774 |
tcatcactgttgctcactgcaaatatctctttcattgaagcacaaagagttacggatatgatctccaaattttgaaattgttgaactaat |
6175863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 596
Target Start/End: Original strand, 6245756 - 6245845
Alignment:
| Q |
507 |
tcatcacagttgctcactgaaaatatctctttcattgatttacaatgagatacggatattttctccagatttcgaagtccttgaactaat |
596 |
Q |
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||||||| |||||||||| |||||||||||||||||| | |||||| |||| |||| ||||||||||| ||||| |||||||||| |
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| T |
6245756 |
tcatcactgttgctcactacaaatatctctttcattgaataacaatgctgtacgtctattgtctccagattttgaagttgttgaactaat |
6245845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 491
Target Start/End: Original strand, 6092659 - 6092730
Alignment:
| Q |
420 |
cctttgcacacgatcttcaattgtggtaaatcccacaacaacaatttggtcaacttgggaagtgcaatgctt |
491 |
Q |
| |
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||||||||||| ||||||| |||||||||||| | |||| || ||||||||||||||| |||||||||| |
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| T |
6092659 |
cctttgcacacaatcttcagttgtggtaaatctcccaactctaaactggtcaacttgggaaatgcaatgctt |
6092730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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