View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10050_10 (Length: 303)
Name: NF10050_10
Description: NF10050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10050_10 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 284
Target Start/End: Original strand, 6206539 - 6206813
Alignment:
| Q |
10 |
caatgagatacggatattttctccagatttcgaagtccttgaactaatggtggtgtcagcaaggtctctatcagattacatttagaaatgttaaaatatt |
109 |
Q |
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| T |
6206539 |
caatgagatacggatattttctccagattttgaagtccttgaactaatggtggtgtcagcaaggtctctatccgattacatttagaaatgttaaaatatt |
6206638 |
T |
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| Q |
110 |
tcaaacaagagaatatgccactccgtgacaaagattggtcaacaactttatagacaacagttaaactttccaatctttgaagttccaaaacttccagcct |
209 |
Q |
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| T |
6206639 |
tcaaacaagagaatatgccactccgtgacaaagattggtcaacaactttatagacaacagttaaactttccaatctttgaagttccaaaacttccagctt |
6206738 |
T |
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| Q |
210 |
gtgaatattggtgcaaaaggaacaagaaccggatgaacaaaacaagctctcaagttgtcggcaactgatgatgtc |
284 |
Q |
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| T |
6206739 |
gtgaatattggtgcaaaaggaacaagaaccggatgaacaaaacaagctctcaagttgtcggcaactgataatgtc |
6206813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 25 - 284
Target Start/End: Original strand, 6232972 - 6233231
Alignment:
| Q |
25 |
attttctccagatttcgaagtccttgaactaatggtggtgtcagcaaggtctctatcagattacatttagaaatgttaaaatatttcaaacaagagaata |
124 |
Q |
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| T |
6232972 |
atttcctccagatttcgaagtccttgaactaatggtggtgtcagcaaggtctctatccgattacatttagaaatgttaaaatatttcaaacaagagaata |
6233071 |
T |
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| Q |
125 |
tgccactccgtgacaaagattggtcaacaactttatagacaacagttaaactttccaatctttgaagttccaaaacttccagcctgtgaatattggtgca |
224 |
Q |
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| T |
6233072 |
tgccactccgtgacaaagattggtcaacaactttatagacaacagttaaactttccaatctttgaagttccaaaacttccagcttgtgaatattggtgca |
6233171 |
T |
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| Q |
225 |
aaaggaacaagaaccggatgaacaaaacaagctctcaagttgtcggcaactgatgatgtc |
284 |
Q |
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| T |
6233172 |
aaaggaacaagaaccggatgaacaaaacaagctctcaagttgtcggcaactgataatgtc |
6233231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 149 - 273
Target Start/End: Original strand, 6087560 - 6087684
Alignment:
| Q |
149 |
caacaactttatagacaacagttaaactttccaatctttgaagttccaaaacttccagcctgtgaatattggtgcaaaaggaacaagaaccggatgaaca |
248 |
Q |
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| T |
6087560 |
caacatctttacagacgacaattaaactttccatacttctaagttccaaatcttcaaggttgtgaatcttggtgcaaaaggaacaagaaccagataaaca |
6087659 |
T |
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| Q |
249 |
aaacaagctctcaagttgtcggcaa |
273 |
Q |
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| T |
6087660 |
aaacaagctctccagttgttggcaa |
6087684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 6104277 - 6104381
Alignment:
| Q |
155 |
ctttatagacaacagttaaactttccaatctttgaagttccaaaacttccagcctgtgaatattggtgcaaaaggaacaagaaccggatgaacaaaacaa |
254 |
Q |
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||||| ||||||| |||||||||| ||| ||| ||||| ||||||||| || |||||||| ||||||||||||||||||||||| ||| |||||||||| |
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| T |
6104277 |
ctttacagacaacggttaaacttttcaaacttacaagtttcaaaacttcaaggctgtgaatcttggtgcaaaaggaacaagaacctgataaacaaaacaa |
6104376 |
T |
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| Q |
255 |
gctct |
259 |
Q |
| |
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||||| |
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| T |
6104377 |
gctct |
6104381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 6092949 - 6093021
Alignment:
| Q |
165 |
aacagttaaactttccaatctttgaagttccaaaacttccagcctgtgaatattggtgcaaaaggaacaagaa |
237 |
Q |
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| T |
6092949 |
aacagttaaactttccaaactttgaagttccaaaacttcaaggttgtgaatcttggtgcaaaaggaacaagaa |
6093021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 273
Target Start/End: Original strand, 6175967 - 6176091
Alignment:
| Q |
149 |
caacaactttatagacaacagttaaactttccaatctttgaagttccaaaacttccagcctgtgaatattggtgcaaaaggaacaagaaccggatgaaca |
248 |
Q |
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| T |
6175967 |
caacatctttacagacaactgttaaacttttcaaatatgaaagttccaaaacttcaaggttgtgaatcttggtgcaaaaggaacaagaaccagataaaca |
6176066 |
T |
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| Q |
249 |
aaacaagctctcaagttgtcggcaa |
273 |
Q |
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| T |
6176067 |
aaacaagctctccatttgttggcaa |
6176091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 6245952 - 6246056
Alignment:
| Q |
155 |
ctttatagacaacagttaaactttccaatctttgaagttccaaaacttccagcctgtgaatattggtgcaaaaggaacaagaaccggatgaacaaaacaa |
254 |
Q |
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||||| |||||| ||||||||||||| ||||||||| ||||||||||| || ||||||| ||||||||||||||||| |||| ||| |||||||||| |
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| T |
6245952 |
ctttacagacaatggttaaactttccagtctttgaagatccaaaacttcaaggttgtgaatcatggtgcaaaaggaacaaaaacctgataaacaaaacaa |
6246051 |
T |
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| Q |
255 |
gctct |
259 |
Q |
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||||| |
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| T |
6246052 |
gctct |
6246056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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