View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10050_2 (Length: 492)
Name: NF10050_2
Description: NF10050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10050_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 37085437 - 37084946
Alignment:
| Q |
1 |
gctttatttttcatgttcacaaatatgtattcataaattagactaaactttattgtgcaatgtgattttttgcagt-gggttgttcaaggagcagtggat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
37085437 |
gctttatttttcatgttcacaaatatgtattcataaattagactaaactttattgtgcaatgtgattttttgtagttgggttgttcaaggagcagtggat |
37085338 |
T |
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| Q |
100 |
gtgaacattggtgctaacccttctgctgagggtggagacgaggatgacggtgttgatgatcaagctgtgaaagtagttgatattgttgacactttcaggc |
199 |
Q |
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| T |
37085337 |
gtgaacattggtgctaacccttctgctgagggtggagacgaggatgacggtgttgatgatcaagctgtgaaagtggttgatattgttgacactttcaggc |
37085238 |
T |
|
| Q |
200 |
ttcaagagcaaccagcttttgataagaagcaattcgttacttacatgaaaagatatattaagttgctgacatctaaattagaactagaaaagcaagagtt |
299 |
Q |
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| T |
37085237 |
ttcaagagcaaccagcttttgataagaagcaatttgttacttacatgaaaagatatattaagttgttgacatctaaattagaactagaaaagcaagagtt |
37085138 |
T |
|
| Q |
300 |
gttcaagaagcacattgaagcagcaactaagtttctcctcccaaaactcaaagacctacaattgtatgtatttcatcattatctttcatcnnnnnnnnnn |
399 |
Q |
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| T |
37085137 |
gttcaagaagcacattgaagcagcaactaagtttctcctcccaaaactcaaagacctacaattgtatgtatttcatcattatctttcatc-ttttttttt |
37085039 |
T |
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| Q |
400 |
nnggtttacttattaagtttattcttttttgtggataaataatccttactgattaattaatgaatgttacagttttgttggagagagcatgca |
492 |
Q |
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| T |
37085038 |
ttggtttacttattaagtttattcttttttgtggataaataatccttactgattaattaatgaatgttacagttttgttggagagagcatgca |
37084946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 37091964 - 37091474
Alignment:
| Q |
1 |
gctttatttttcatgttcacaaatatgtattcataaattagactaaactttattgtgcaatgtgattttttgcagtgggttgttcaaggagcagtggatg |
100 |
Q |
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|||||||||||||||||| ||||||| | |||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
37091964 |
gctttatttttcatgttcccaaatatatgttcataaattagcctaaagtttat-gtgcaatgtgattttttgtagtgggttgttcaaggagcagtagatg |
37091866 |
T |
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| Q |
101 |
tgaacattggtgctaacccttctgctgagggtggagacgaggatgacggtgttgatgatcaagctgtgaaagtagttgatattgttgacactttcaggct |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37091865 |
tgaatattggtgctaacccttctgctgagggtggagacgaggatgacggtgttgatgatcaagctgtgaaagtggttgatattgttgacactttcaggct |
37091766 |
T |
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| Q |
201 |
tcaagagcaaccagcttttgataagaagcaattcgttacttacatgaaaagatatattaagttgctgacatctaaattagaactagaaaagcaagagttg |
300 |
Q |
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||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
37091765 |
tcaggagcaaccaacttttgataagaagcaatttgttacttacatgaaaagatatattaagttgctgacatctaaattagagccagaaaagcaagagttg |
37091666 |
T |
|
| Q |
301 |
ttcaagaagcacattgaagcagcaactaagtttctcctcccaaaactcaaagacctacaattgtatgtatttcatcattatctttcatcnnnnnnnnnnn |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37091665 |
tttaagaagcacattgaagcagcaactaagtttctcctcccaaaactcaaagacctacaattgtatgtgtttcatcattatctttcattttttttttttt |
37091566 |
T |
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| Q |
401 |
nggtttacttattaagtttattcttttttgtggataaataatccttactgat----taattaatgaatgttacagttttgttggagagagcatgca |
492 |
Q |
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| | ||||||||||| |||||||||||||||| ||||| |||||||| |||| ||| |||||| |||||||||||||||||||||||| |
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| T |
37091565 |
tgtt----ttattaagttttctcttttttgtggataagtaatctttactgattgagtaatgaatcaatgttgcagttttgttggagagagcatgca |
37091474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 37106017 - 37105630
Alignment:
| Q |
1 |
gctttatttttcatgttcacaaatatgtattcataaattagactaaactttattgtgcaatgtgattttttgcagtgggttgttcaaggagcagtggatg |
100 |
Q |
| |
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|||||||||||||||||| ||||||| | |||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
37106017 |
gctttatttttcatgttcccaaatatatgttcataaattagcctaaagtttat-gtgcaatgtgattttttgtagtgggttgttcaaggagcagtagatg |
37105919 |
T |
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| Q |
101 |
tgaacattggtgctaacccttctgctgagggtggagacgaggatgacggtgttgatgatcaagctgtgaaagtagttgatattgttgacactttcaggct |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37105918 |
tgaatattggtgctaacccttctgctgagggtggagacgaggatgacggtgttgacgatcaagctgtgaaagtggttgatattgttgacactttcaggct |
37105819 |
T |
|
| Q |
201 |
tcaagagcaaccagcttttgataagaagcaattcgttacttacatgaaaagatatattaagttgctgacatctaaattagaactagaaaagcaagagttg |
300 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
37105818 |
tcaagagcaaccaacttttgataagaaacaattcgttacttatatgaagagatatattaagttgctgacatctaaattagaggcagagaagcaagagttg |
37105719 |
T |
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| Q |
301 |
ttcaagaagcacattgaagcagcaactaagtttctcctcccaaaactcaaagacctacaattgtatgtatttcatcattatctttcatc |
389 |
Q |
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||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||| || |||||||||||||||||||| |
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| T |
37105718 |
ttcaagaagcatattgaagcagcaactaagttccttctcccaaaactcaaggacctacaattgtacgtgtttcatcattatctttcatc |
37105630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 492
Target Start/End: Complemental strand, 37105614 - 37105528
Alignment:
| Q |
414 |
aagtttattcttttttgtggataaataatccttactgatt--------aattaatgaatgttacagttttgttggagagagcatgca |
492 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||| |
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| T |
37105614 |
aagtttattctttattgtgtgtaaataatccttactgattgagtaattaatcaattaatgttgcagttttgttggagagagcatgca |
37105528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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