View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10050_3 (Length: 448)
Name: NF10050_3
Description: NF10050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10050_3 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 28 - 439
Target Start/End: Original strand, 3017512 - 3017923
Alignment:
| Q |
28 |
caaaatgtgtgaacatgcttcttatcaactatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatggcccgtg |
127 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017512 |
caaaatgtgtgaacatgcttcttatcagctatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatggcccgtg |
3017611 |
T |
|
| Q |
128 |
ttatcgaggaaagtgacgatatatctctcggcttactctatccaatcttagattgtgtaaagaaagacaataaggttggtgtttggaaatttaatctcat |
227 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017612 |
ttattgaggaaagtgacgatatatctctcggcttactctatccaatcttagattgtgtaaagaaagacaataaggttggtgtttggaaatttaatctcat |
3017711 |
T |
|
| Q |
228 |
tctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggtggttt |
327 |
Q |
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| T |
3017712 |
tctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggtggttt |
3017811 |
T |
|
| Q |
328 |
cgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatacctatttgcggcatgctgtgaatatgttgggtactatg |
427 |
Q |
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| T |
3017812 |
cgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatacctatttgcggcatgctgtgaatatgttgggtactatg |
3017911 |
T |
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| Q |
428 |
gttgatattctt |
439 |
Q |
| |
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|||||| ||||| |
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| T |
3017912 |
gttgatgttctt |
3017923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 191 - 433
Target Start/End: Original strand, 3020776 - 3021018
Alignment:
| Q |
191 |
aagacaataaggttggtgtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttata |
290 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3020776 |
aagacaataagggtggagtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttata |
3020875 |
T |
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| Q |
291 |
attgtcgtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatac |
390 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
3020876 |
attgtcgtgatcactatcattatgattcaggttgtttcaccaaatgctcgaaagttgggggaaagtgttcttcaaaagtgtgcaacaaggcttataatac |
3020975 |
T |
|
| Q |
391 |
ctatttgcggcatgctgtgaatatgttgggtactatggttgat |
433 |
Q |
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| T |
3020976 |
ctgtttgcggtatgttgtgaatatgttgggtactatggttgat |
3021018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 3020642 - 3020776
Alignment:
| Q |
28 |
caaaatgtgtgaacatgcttcttatcaactatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatggcccgtg |
127 |
Q |
| |
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|||||| |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
3020642 |
caaaatatgtgaacatgcttcttatcagctctgtttgaaactttcagagaacatcatccagaaattgttttctcgtccatggaaaccataatgatccgtg |
3020741 |
T |
|
| Q |
128 |
ttatcgaggaaagtgacgatatatctctcggctta |
162 |
Q |
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|| | ||||||||||||||||||||||| |||||| |
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| T |
3020742 |
tttttgaggaaagtgacgatatatctcttggctta |
3020776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 28 - 384
Target Start/End: Original strand, 3033477 - 3033830
Alignment:
| Q |
28 |
caaaatgtgtgaacatgcttcttatcaactatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatggcccgtg |
127 |
Q |
| |
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||||||||||||||||| |||| | || || |||||||||||||||| ||| |||||||||| | ||||||||||||||||||| | |||||| || |
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| T |
3033477 |
caaaatgtgtgaacatggttctaagcatctctgtttgaaactttcagggaacatcatccagataatgttttctcgtccatggaaactataatgatcctct |
3033576 |
T |
|
| Q |
128 |
ttatcgaggaaagtgacgatatatctctcggcttactctatccaatcttagattgtgtaaagaaagacaataaggttggtgtttggaa--atttaatctc |
225 |
Q |
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| | || |||||||| || |||||| | |||||||| |||||||||||| ||||||||||||||||| ||||||||||||| || ||| | || |
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| T |
3033577 |
gtctagaagaaagtgaagaaatatctgatgacttactctctccaatcttagacagtgtaaagaaagacaatgaggttggtgtttgtaattttttcgtttc |
3033676 |
T |
|
| Q |
226 |
attctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggtggt |
325 |
Q |
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|||||| ||||||| | |||||| | |||||||||| | ||||||||||| ||| |||||||||||| || || |||| |||||||||| ||| |
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| T |
3033677 |
attcttgttaataggtcgtgattgttaaactgaaacat-----atttcattatgaatttcttataattgtcatggctgctgtcatcatgattcaggaggt |
3033771 |
T |
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| Q |
326 |
ttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagctta |
384 |
Q |
| |
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|| ||||||||||||||||||||| |||| || ||| ||| |||||||||| ||||| |
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| T |
3033772 |
tttgccaattgctcgaaagttgggggaaagagtccttgaaagttgtgcaacaaggctta |
3033830 |
T |
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