View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10050_5 (Length: 351)
Name: NF10050_5
Description: NF10050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10050_5 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 30734766 - 30735087
Alignment:
| Q |
1 |
gtacaccactttttcgaacaaacttattacttttgtattttaaacaatgacctaaaagcactcattctttgattgcatactccttcatcaaaagagagct |
100 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30734766 |
gtacaccacttttttgaacaaacttattactttcgtattttaaacagtgacctaaaagcactcattctttgattgcatactccttcatcaaaagagagct |
30734865 |
T |
|
| Q |
101 |
aatatagttcatgaaagtgatgttattgagaagcacgaaactatcaacgattacttactgttattgtagcaatggtcatgttggggttggaaccgggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30734866 |
aatatagttcatgaaagtgatgttattgagaagcacgaaactatcagcgattacttactgttattgtagcaatggtcatgttggggttggaaccgggaaa |
30734965 |
T |
|
| Q |
201 |
aagctgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgccgtttcaaagaagagtcgagatgaattgtgaaag |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30734966 |
aagctgaaattagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgcagtttcaaagaagagtcgagatgaattgtgaaag |
30735065 |
T |
|
| Q |
301 |
gctattatttgaaggttggaat |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
30735066 |
gctattatttgaaggttggaat |
30735087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 14666391 - 14666073
Alignment:
| Q |
1 |
gtacaccactttttcgaacaaacttattacttttgtattttaaacaatgacctaaaagcactcattctttgattgcatactccttcatcaaaagagagct |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14666391 |
gtacaccactttttcgaacaaactcattactttcgtattttaaacagtgacctaaaagcactcattctttgattgcatactcc---atcaaaagagagct |
14666295 |
T |
|
| Q |
101 |
aatatagttcatgaaagtgatgttattgagaagcacgaaactatcaacgattacttactgttattgtagcaatggtcatgttggggttggaaccgggaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14666294 |
aatatagttcatgaaagtgatgttattgagaagtacgaaactatcagcgattacttactgttattgtagcaatggtcatgttgggggtggaaccgggaaa |
14666195 |
T |
|
| Q |
201 |
aagctgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgccgtttcaaagaagagtcgagatgaattgtgaaag |
300 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14666194 |
aagatgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgccgtttcaaagaagagtcgagatgaattgtgaaag |
14666095 |
T |
|
| Q |
301 |
gctattatttgaaggttggaat |
322 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
14666094 |
gctattatttgaaggttggaat |
14666073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 14687266 - 14687594
Alignment:
| Q |
1 |
gtacaccactttttcgaacaaacttattacttttgtattttaaacaatgacctaaaagcactcattctttgattgcatactccttcatcaaaagagagct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||| ||||||| |
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| T |
14687266 |
gtacaccactttttttaacaaacttattactttcgtattttaaacagtgacctaaaagcactaattcgttggttgcatactccttcatcaaatgagagct |
14687365 |
T |
|
| Q |
101 |
aatatagttcatgaaagtgatgttattgagaagcacgaaactatcaacgattacttactgttattgtagcaatggtcatgttggggttggaaccgggaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||||||||||||| ||||| | |||| |
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| T |
14687366 |
gatatagttcatgaaagtgatgttattgagaagcacgaaactatcagcgatatattactgctattgtggcaatggtcatgttggggctggaatcaagaaa |
14687465 |
T |
|
| Q |
201 |
aagctgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgccgtttcaaagaagagtcgagatga------att- |
293 |
Q |
| |
|
||| |||||||||||||| ||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| ||| |
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| T |
14687466 |
aagttgaaaatagagacgaatccaatatctctcttgttgttgaattaagaatgtatatgatgatgccgtttcaaagaagagtcaagatgagtggtgattg |
14687565 |
T |
|
| Q |
294 |
gtgaaaggctattatttgaaggttggaat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
14687566 |
gtgaaaggctattatttgaaggttggaat |
14687594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 69 - 286
Target Start/End: Original strand, 14672621 - 14672831
Alignment:
| Q |
69 |
ttgattgcatactccttcatcaaaagagagctaatatagttcatgaaagtgatgttattgagaagcacgaaactatcaacgattacttactgttattgta |
168 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| |||||||| ||||| ||| |||||||||||||||| ||||||| || ||||||||||||| |
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| T |
14672621 |
ttgattgactactccttcatcaaatgagagctattatagttcgtgaaattgaaattattgagaagcacgatactatcagcg----gttactgttattgtg |
14672716 |
T |
|
| Q |
169 |
gcaatggtcatgttggggttggaaccgggaaaaagctgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgccg |
268 |
Q |
| |
|
|||| |||| |||| ||||||||| | |||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
14672717 |
gcaaaggtcgtgttagggttggaatcaggaagagggtgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtat---atgatgacg |
14672813 |
T |
|
| Q |
269 |
tttcaaagaagagtcgag |
286 |
Q |
| |
|
|||||||||||||||||| |
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| T |
14672814 |
tttcaaagaagagtcgag |
14672831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 69 - 286
Target Start/End: Original strand, 14677999 - 14678209
Alignment:
| Q |
69 |
ttgattgcatactccttcatcaaaagagagctaatatagttcatgaaagtgatgttattgagaagcacgaaactatcaacgattacttactgttattgta |
168 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| |||||||| ||||| ||| |||||||||||||||| ||||||| || ||||||||||||| |
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|
| T |
14677999 |
ttgattgactactccttcatcaaatgagagctattatagttcgtgaaattgaaattattgagaagcacgatactatcagcg----gttactgttattgtg |
14678094 |
T |
|
| Q |
169 |
gcaatggtcatgttggggttggaaccgggaaaaagctgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgccg |
268 |
Q |
| |
|
|||| |||| |||| ||||||||| | |||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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|
| T |
14678095 |
gcaaaggtcgtgttagggttggaatcaggaagagggtgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtat---atgatgacg |
14678191 |
T |
|
| Q |
269 |
tttcaaagaagagtcgag |
286 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
14678192 |
tttcaaagaagagtcgag |
14678209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 77 - 286
Target Start/End: Complemental strand, 24057495 - 24057293
Alignment:
| Q |
77 |
atactccttcatcaaaagagagctaatatagttcatgaaagtgatgttattgagaagcacgaaactatcaacgattacttactgttattgtagcaatggt |
176 |
Q |
| |
|
||||||||||||||| ||||| || ||||||| | ||||||| ||||| |||||||| ||| ||||| |||||| |||||| |||| ||| |
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|
| T |
24057495 |
atactccttcatcaagtgagagttactatagtttacaaaagtgaagttatcaagaagcacataaccatcaatgattacc----gttattaaggcaaaggt |
24057400 |
T |
|
| Q |
177 |
catgttggggttggaaccgggaaaaagctgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgccgtttcaaag |
276 |
Q |
| |
|
||||||| |||||||| |||| ||| | ||||||| |||||||||||| |||||||| |||||||||||||||||||||| | |||||| |||||||| |
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|
| T |
24057399 |
catgttgtggttggaatcgggtaaagggtgaaaatggagacggatccagtgtctcccatgttgttgaattttgaatgtat---aggatgccttttcaaag |
24057303 |
T |
|
| Q |
277 |
aagagtcgag |
286 |
Q |
| |
|
|||| ||||| |
|
|
| T |
24057302 |
aagattcgag |
24057293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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