View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10050_8 (Length: 319)

Name: NF10050_8
Description: NF10050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10050_8
NF10050_8
[»] chr1 (4 HSPs)
chr1 (147-309)||(37106476-37106644)
chr1 (1-80)||(37106711-37106790)
chr1 (25-72)||(37092805-37092852)
chr1 (33-72)||(37086106-37086145)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 147 - 309
Target Start/End: Complemental strand, 37106644 - 37106476
Alignment:
Q  147 atgttctgttgattgttaaatacttgttcctgtatttagtgtatgaatgaattttgtgttatgtttctcataaacctcactttgg-------nnnnnnnn 239  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||                   
T  37106644 atgttctgttgattgttaaatacttgatcctgtatttagtgtatgaatgaattttgtgttatgtttctcacaaacctcactttggttctttttttttttt 37106545  T
Q  240 gtcctnnnnnnncagagaggttttaaggttttttctaaaagaacatgaagttttctgtttgtgttctgtg 309  Q
    |||||       ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37106544 gtcct-aaaaaacagagaggttttaaggttttttcaaaaagaacatgaagttttctgtttgtgttctgtg 37106476  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 37106790 - 37106711
Alignment:
Q  1 cttttttgttctctcatcaataacaacaacgactgcaaccatgcttgtttaccaggatcttcttacaggtaataaaaacc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37106790 cttttttgttctctcatcaataacaacaacgactgcaaccatgcttgtttaccaggatcttcttacaggtaataaaaacc 37106711  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 37092852 - 37092805
Alignment:
Q  25 aacaacgactgcaaccatgcttgtttaccaggatcttcttacaggtaa 72  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||    
T  37092852 aacaacaaccgcaaccatgcttgtttaccaggatcttcttacaggtaa 37092805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 37086145 - 37086106
Alignment:
Q  33 ctgcaaccatgcttgtttaccaggatcttcttacaggtaa 72  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37086145 ctgcaaccatgcttgtttaccaggatcttcttaccggtaa 37086106  T

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