View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10050_high_1 (Length: 202)
Name: NF10050_high_1
Description: NF10050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10050_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 5508734 - 5508901
Alignment:
| Q |
13 |
acctgtgggaaacctcctaatagacaacctaagaatttggactctaagggtcaggggaatcatgcctctaatggattctttgatacaaaaagtgaacaaa |
112 |
Q |
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| T |
5508734 |
acctgtggaaaacctcctaatagacaacctaagaatttggactctgagggtcaggggaatcatgcctctaatggattctttgatacaaaaagtgaacaaa |
5508833 |
T |
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| Q |
113 |
tgtttctagtgtctgatgatttgaagattgtgccaagttccttgctgaactccatgcagatgttgctg |
180 |
Q |
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| T |
5508834 |
tgtttctagtgtctgatgatttgaagattttgccaagttccttgctgaactccatgcagatgttgctg |
5508901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 5487485 - 5487649
Alignment:
| Q |
13 |
acctgtgggaaacctcctaatagacaacctaagaatttggactctaagggtcaggggaatcatgcctctaatggattctttgatacaaaaagtgaacaaa |
112 |
Q |
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| T |
5487485 |
acctgtggaaaacccattaataaacagcctaagaatttggactctgatggtcaagggaataatgcccaaaatggggtctttgtaagagaaaatggatcat |
5487584 |
T |
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| Q |
113 |
tgtttctagtgtctgatgatttgaagattgtgccaagttccttgctgaactccatgcagatgttg |
177 |
Q |
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| T |
5487585 |
tgtttctggtgtctgatgatttgaagattgtgacagactccttgctgtcctccgtgcagatgttg |
5487649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 5999102 - 5999039
Alignment:
| Q |
121 |
gtgtctgatgatttgaagattgtgccaagttccttgctgaactccatgcagatgttgctggaat |
184 |
Q |
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| T |
5999102 |
gtgtatgatgatttgaagattgtgcctagttctttggtgagttccatgcagatgttgatggaat |
5999039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 5437128 - 5437087
Alignment:
| Q |
111 |
aatgtttctagtgtctgatgatttgaagattgtgccaagttc |
152 |
Q |
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| T |
5437128 |
aatgtttctggtgtctgatgatttaaagattgtgccaagttc |
5437087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 5458467 - 5458426
Alignment:
| Q |
113 |
tgtttctagtgtctgatgatttgaagattgtgccaagttcct |
154 |
Q |
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| T |
5458467 |
tgtttctggtgtccgatgatttaaagattgtgccaagttcct |
5458426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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