View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10051_high_4 (Length: 289)

Name: NF10051_high_4
Description: NF10051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10051_high_4
NF10051_high_4
[»] chr4 (9 HSPs)
chr4 (1-284)||(9137700-9137980)
chr4 (154-278)||(8040543-8040661)
chr4 (216-284)||(8411974-8412042)
chr4 (153-216)||(8035048-8035111)
chr4 (216-279)||(8417596-8417659)
chr4 (216-278)||(8035173-8035235)
chr4 (153-216)||(8417721-8417783)
chr4 (216-273)||(46191028-46191085)
chr4 (217-263)||(8405056-8405102)
[»] chr2 (1 HSPs)
chr2 (227-284)||(33085135-33085192)
[»] chr7 (2 HSPs)
chr7 (217-273)||(5477606-5477662)
chr7 (154-216)||(5477755-5477815)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 9137700 - 9137980
Alignment:
Q  1 tctgagaatggttctgagatcacatattgtgcgagatcatctcataccatatcgtttaggattgagcaaaataaagaaattataagcccaaaaccaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  9137700 tctgagaatggttctgagatcacatattgtgcgagatcatctcataccatatcgtttaggattgagcaaaataaagaaat---aagcccaaaaccaacaa 9137796  T
Q  101 gttgtttgggatgttcgttgaacaattctgaaatccacaggatttccaccatcagaaaaaacgttgaggcatcaacctcaaaataatgaaaaacaaaacc 200  Q
    |||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9137797 gttgtttgggatgttcgttgaacaattccgaaattcacaggacttgcaccatcagaaaaaacgttgaggcatcaacctcaaaataatgaaaaacaaaacc 9137896  T
Q  201 tacgtccaacttgaacaactctagtcattgacgtagtgttttgaagcaagtgttccactacttccattatttcttgtttcttat 284  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9137897 tacgtccaacttgaacaactctagtcattgaagtagtgttttgaagcaagtgttccactatttccattatttcttgtttcttat 9137980  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 154 - 278
Target Start/End: Original strand, 8040543 - 8040661
Alignment:
Q  154 agaaaaaacgttgaggcatcaacctcaaaataatgaaaaacaaaacctacgtccaacttgaacaactctagtcattgacgtagtgttttgaagcaagtgt 253  Q
    |||||||| ||||||||||||||||||||||||| |||||||||| ||||   ||||||||||   ||||| || ||| |||||||||||||||||||||    
T  8040543 agaaaaaaggttgaggcatcaacctcaaaataatcaaaaacaaaagctac---caacttgaac---tctaggcactgaagtagtgttttgaagcaagtgt 8040636  T
Q  254 tccactacttccattatttcttgtt 278  Q
    | |||||||||||||||||||||||    
T  8040637 ttcactacttccattatttcttgtt 8040661  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 8412042 - 8411974
Alignment:
Q  216 caactctagtcattgacgtagtgttttgaagcaagtgttccactacttccattatttcttgtttcttat 284  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  8412042 caactctaggcattgaagtagtgttttgaagcaagtgtttcactacttccattatttcttgttccttat 8411974  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 8035048 - 8035111
Alignment:
Q  153 cagaaaaaacgttgaggcatcaacctcaaaataatgaaaaacaaaacctacgtccaacttgaac 216  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  8035048 cagaaaaaaagttgaggcatgaacctcaaaataatgaaaaacaaaagctacgtccaacttgaac 8035111  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 8417659 - 8417596
Alignment:
Q  216 caactctagtcattgacgtagtgttttgaagcaagtgttccactacttccattatttcttgttt 279  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  8417659 caactctaggcattgaagtcgtgttttgaagcaagtgttccactacttccattatttcttgttt 8417596  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 8035173 - 8035235
Alignment:
Q  216 caactctagtcattgacgtagtgttttgaagcaagtgttccactacttccattatttcttgtt 278  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  8035173 caactctaggcattaaagtagtgttttgaagcaagtgttccactacttccattatttcttgtt 8035235  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 8417783 - 8417721
Alignment:
Q  153 cagaaaaaacgttgaggcatcaacctcaaaataatgaaaaacaaaacctacgtccaacttgaac 216  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||| |||||||||||||||||    
T  8417783 cagaaaaaaggttgaggcattaacctcaaaataatg-aaaacaaaagctacgtccaacttgaac 8417721  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 46191028 - 46191085
Alignment:
Q  216 caactctagtcattgacgtagtgttttgaagcaagtgttccactacttccattatttc 273  Q
    ||||| ||| ||||||  |||||||||||||||| |||||||||||||||||||||||    
T  46191028 caactttaggcattgaaatagtgttttgaagcaattgttccactacttccattatttc 46191085  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 8405102 - 8405056
Alignment:
Q  217 aactctagtcattgacgtagtgttttgaagcaagtgttccactactt 263  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||    
T  8405102 aactctaggcattggagtagtgttttgaagcaagtgttccactactt 8405056  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 33085192 - 33085135
Alignment:
Q  227 attgacgtagtgttttgaagcaagtgttccactacttccattatttcttgtttcttat 284  Q
    ||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  33085192 attgaagtagtgttttgaagcaagtgtttcactgcttccattatttcttgttccttat 33085135  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 5477662 - 5477606
Alignment:
Q  217 aactctagtcattgacgtagtgttttgaagcaagtgttccactacttccattatttc 273  Q
    |||||||| |||||  |||||||||||||||||||||||||| | ||| ||||||||    
T  5477662 aactctaggcattggagtagtgttttgaagcaagtgttccacaatttcgattatttc 5477606  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 5477815 - 5477755
Alignment:
Q  154 agaaaaaacgttgaggcatcaacctcaaaataatgaaaaacaaaacctacgtccaacttgaac 216  Q
    |||||||| ||||||||||||| |||||  ||||||||||||||| |||| |||||| |||||    
T  5477815 agaaaaaaagttgaggcatcaagctcaa--taatgaaaaacaaaagctacatccaacatgaac 5477755  T

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