View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10051_low_1 (Length: 456)
Name: NF10051_low_1
Description: NF10051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10051_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 41309273 - 41309704
Alignment:
| Q |
9 |
aatgagaaatgccatgaagcctacaaacctatgtcagccatgtatattgtgtacattaatcaatggaaggaagttcacaatttcaattagcatatttgaa |
108 |
Q |
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| T |
41309273 |
aatgagaaatgccatgaagcctccaaacctaagtcagacatgtatattgtgtacattaatcaatggaaggaagttcacaatttcaattagcatatttgaa |
41309372 |
T |
|
| Q |
109 |
atttgaatttaaatgtgtgttgtgttatctatctcaccattgccatttataggcagtgaaaatggctatgcgtccgggactcaaggtagtgggtctaagc |
208 |
Q |
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| T |
41309373 |
atttgaaattaaatgtgtgttgtgttatctatctcaccattgccatttataggcagtgaaaatggctatgcgtccgggactcaaggtagtgggtctaagc |
41309472 |
T |
|
| Q |
209 |
ttggtggtaaatgtctctattagagccacaatacaatatacaagagctattctctgcacacaaaatttcataaacttggttaatgtgattattctgcatt |
308 |
Q |
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| T |
41309473 |
ttggtggtaaatgtctctattagagccacaatacaatatacaagggctattctctgcacacaaaatttcataaacttggttaatgtgattattctgcatt |
41309572 |
T |
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| Q |
309 |
aggccctgcataaataacattaaatttaattcgaaacacacctggagaatgccacaccatctgataaatttcatgttaactccatatacgagttcatcag |
408 |
Q |
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| T |
41309573 |
aggccctgcataaataacattaaatttaattcgaaacacacctggagaatgccacaccatctgataaatttcatgttaactccatatacgagttcatcag |
41309672 |
T |
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| Q |
409 |
gggcatgagagtatccacctatagtttgttac |
440 |
Q |
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| T |
41309673 |
gggcatgagagtatccacctatagtttgttac |
41309704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 79 - 270
Target Start/End: Original strand, 41323954 - 41324141
Alignment:
| Q |
79 |
aagttcacaatttcaattagcatatttgaaatttgaatttaaatgtgtgttgtgttatctatctcaccattgccatttataggcagtgaaaatggctatg |
178 |
Q |
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||||||| | |||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41323954 |
aagttcagactttcaattagtatatttgaaatttgaaattaaatgagtgttgtgttatc----tcaccattgccatttataggcagtgaaaatggctatg |
41324049 |
T |
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| Q |
179 |
cgtccgggactcaaggtagtgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatacaagagctattctctgcacaca |
270 |
Q |
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| T |
41324050 |
cgtccaggcctcaaggtagtgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatactagtgctattctctgcacaca |
41324141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 395
Target Start/End: Original strand, 41324235 - 41324282
Alignment:
| Q |
348 |
acctggagaatgccacaccatctgataaatttcatgttaactccatat |
395 |
Q |
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| T |
41324235 |
acctgtagaatgccacaccatctaataaatttcatgtcgactccatat |
41324282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 27657618 - 27657492
Alignment:
| Q |
140 |
tctcaccattgccatttataggcagtgaaaatggctatgcgtccgggactcaaggtagtgggtctaagcttggtggtaaatgtctctattagagccacaa |
239 |
Q |
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||||||||||||||| ||||| ||| ||||||| || | ||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| |||| |
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| T |
27657618 |
tctcaccattgccatctatagctagtaaaaatggataggtatccaggactcaaggttgtaggtctaagcttagtggtaaatgtctctattagagctacaa |
27657519 |
T |
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| Q |
240 |
tacaatatacaagagctattctctgca |
266 |
Q |
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| T |
27657518 |
tgcaatatacaagagctatcctctgca |
27657492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 348 - 437
Target Start/End: Complemental strand, 27657378 - 27657289
Alignment:
| Q |
348 |
acctggagaatgccacaccatctgataaatttcatgttaactccatatacgagttcatcaggggcatgagagtatccacctatagtttgt |
437 |
Q |
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| T |
27657378 |
acctgaagaatgccacaccatctgataaatttcatgtcaactccatatgagagatcatcaggggcatgtgaatatccacctgcagtttgt |
27657289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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