View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10051_low_2 (Length: 356)
Name: NF10051_low_2
Description: NF10051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10051_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 77 - 349
Target Start/End: Complemental strand, 41308831 - 41308559
Alignment:
| Q |
77 |
atttgtaggcatgcacatttagttccccaagtgagggtccatttcgcgatgatgctccaagctggtgtcttgctccatttgaaccagagggcttattgag |
176 |
Q |
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| T |
41308831 |
atttgtaggcatgcacatttagttccccaagtgagggtccatttcgtgatgatgctccaagctggtgtcttgctccatttgaaccagagggcttattgag |
41308732 |
T |
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| Q |
177 |
gtatttgtctctaaaatttgtattgagtagcatctgatatatattattagaaatatcttaaaggagttttactttttgatagttccatatcagcaatcct |
276 |
Q |
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| T |
41308731 |
gtatttgtctctaaaatttgtattgagtagcatctgatatatattattagaaatatcttaaaggagttttactttttgatagttccatatcagcaatcct |
41308632 |
T |
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| Q |
277 |
ctcaggcaccattggcatccattatgggcatgtcttgattcatttcaaggttataaaatctcaccctttgcta |
349 |
Q |
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| T |
41308631 |
ctcaggcaccattggcatccattatgggcacgtcttgattcatttcaaggttataaaatctcaccctatgcta |
41308559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 41308963 - 41308884
Alignment:
| Q |
1 |
aaatacacaaggttcaggtcaaaaattgatcacaagttgataaaattgttctaaataaaatggcattggtctgaatattt |
80 |
Q |
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| T |
41308963 |
aaatacacaaggttcaggtcaaaaattgatcacaagttgataaaattgttctaaataaaatggcattggtctgaatattt |
41308884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 337
Target Start/End: Complemental strand, 41322703 - 41322622
Alignment:
| Q |
256 |
tagttccatatcagcaatcctctcaggcaccattggcatccattatgggcatgtcttgattcatttcaaggttataaaatct |
337 |
Q |
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| T |
41322703 |
tagttccatatcggcaatcctctcgggaaccatcggcatccattatgggcatgtcttgattcatttcaaggttacaaaatct |
41322622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 41323380 - 41323284
Alignment:
| Q |
82 |
taggcatgcacatttagttccccaagtgagggtccatttcgcgatgatgctccaagctggtgtcttgctccatttgaaccagagggcttattgaggt |
178 |
Q |
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| T |
41323380 |
taggaatgcacattcagttctccaggcgaaggtccaattcgcgaagatgctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggt |
41323284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 27659943 - 27660016
Alignment:
| Q |
256 |
tagttccatatcagcaatcctctcaggcaccattggcatccattatgggcatgtcttgattcatttcaaggtta |
329 |
Q |
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|||||| |||||||| ||||| || || |||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
27659943 |
tagttctatatcagctatcctatctgggaccattggcatccactatggacatgtcttgattcatttcaaggtta |
27660016 |
T |
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