View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10051_low_5 (Length: 274)
Name: NF10051_low_5
Description: NF10051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10051_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 76 - 259
Target Start/End: Complemental strand, 1696878 - 1696699
Alignment:
| Q |
76 |
attcgacaaatattctctaacaatctaatataacgtttataggttaacaagtttgtagattattctgcatgcatatcaactatttactaagtacatttca |
175 |
Q |
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| T |
1696878 |
attcgacaaatattctctaacaatctaatataacgtttataggttaacaagtttgtagattattctgcatgcatatcaactatttactaagtacatttca |
1696779 |
T |
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| Q |
176 |
tcaatacccttattgatgagcatgcatatcaatatcatgca--tttgtgtaagaaaatgcttataaggccaaaaattaacagtttc |
259 |
Q |
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| T |
1696778 |
tcaatacccttattgatgagcatgcat------atcatgcaggtttgtgtaagaaaatgcttataaggccaaaaattaacagtttc |
1696699 |
T |
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Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 1698858 - 1698784
Alignment:
| Q |
5 |
atttatttaaatttgaagtatctacatgttgttaaaacgtattaaaaaattaaacaaagctataatttttaattc |
79 |
Q |
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| T |
1698858 |
atttatttaaatttgaaatatctacatgttgttaaaacgtattaaaagattaaacaaagctataatttttaattc |
1698784 |
T |
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