View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10052_high_15 (Length: 243)
Name: NF10052_high_15
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 45944269 - 45944477
Alignment:
| Q |
14 |
agcaaagggggttggtttggtaattttaactttctcaagcagatcatgatatgttgcaacattaggctgaaaaacgaacattccagcattgaaatataga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45944269 |
agcaaagggggttggtttggtaattttaactttctcaagcagatcatgatatgttgcaacattaggctgaaaaacgaacattccagcattgaaatataga |
45944368 |
T |
|
| Q |
114 |
ggaggcttaggtccaaaattagatggccattgaaccttatcaggacattgttgacagtatccaatcttatactgaggagtgtgactccaagtcttttcac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45944369 |
ggaggcttaggtccaaaattagatggccattgaaccttatcaggacattgttgacagtatccaatcttatactgaggagtgtgactccaagtcttttcac |
45944468 |
T |
|
| Q |
214 |
agaaacagt |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
45944469 |
agaaacagt |
45944477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 37687222 - 37687309
Alignment:
| Q |
85 |
aaacgaacattccagcattgaaatatagaggaggcttaggtccaaaattagatggccattgaaccttatcaggacattgttgacagta |
172 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| || || ||||| |||| ||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
37687222 |
aaacaaacatgccagcattgaaatatagaggaggtttgggcccaaagttagcaggccactgaaccttgtcagggcactgttgacagta |
37687309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 37698296 - 37698209
Alignment:
| Q |
85 |
aaacgaacattccagcattgaaatatagaggaggcttaggtccaaaattagatggccattgaaccttatcaggacattgttgacagta |
172 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| || || ||||| |||| ||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
37698296 |
aaacaaacatgccagcattgaaatatagaggaggtttgggcccaaagttagcaggccactgaaccttgtcagggcactgttgacagta |
37698209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 55222231 - 55222138
Alignment:
| Q |
85 |
aaacgaacattccagcattgaaatatagaggaggcttaggtccaaaattagatggccattgaaccttatcaggacattgttgacagtatccaat |
178 |
Q |
| |
|
|||| ||||| |||||||||||||| | ||| || || | |||||| ||||| |||||||||||||| || |||||||| |||||||| ||||| |
|
|
| T |
55222231 |
aaacaaacatgccagcattgaaatacaaaggtggtttggatccaaagttagagggccattgaaccttgtctggacattgctgacagtaaccaat |
55222138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University