View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_high_7 (Length: 335)
Name: NF10052_high_7
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 31521161 - 31520842
Alignment:
| Q |
16 |
cacattgatttaacaatttcaaaaccaatggtaactggtaaagtatcttggaattaaggccactaattgcacatgatagctttgtttaatttgtgaatat |
115 |
Q |
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| T |
31521161 |
cacattgatttaacaatttcaaaaccaatggtaactggtaaagtatcttggaattaaggccactaattgcacatgatagctttgtttaatttgtgaatat |
31521062 |
T |
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| Q |
116 |
gtttgtggatgctt----atccccattgaattgaaactaaccacatgctaaataagtgttcaaatgctataactttttctgcaaagaagaaacaatgtat |
211 |
Q |
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| T |
31521061 |
gtttgtggatgcttgcttatccccattgaattgaaactaaccacatgctaaataagtgttcaaatgctataactttttctgcaaagaagaaacaatgtat |
31520962 |
T |
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| Q |
212 |
tttcttttcaaattttattttcttcgtttacatctcttgttttaggaatttgaaatatatgatgtatctcttgttaaacacttaatcaagatttgtttga |
311 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31520961 |
tttcttttgaaattttattttcttcgtttacatctcttgttttaggaatttgaaatgtatgatgtatctcttgttaaacacttaatcaagatttgtttga |
31520862 |
T |
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| Q |
312 |
taaatgcatctgtgctcctc |
331 |
Q |
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||||||||| |||| ||||| |
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| T |
31520861 |
taaatgcatttgtggtcctc |
31520842 |
T |
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