View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_high_9 (Length: 320)
Name: NF10052_high_9
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 40269409 - 40269109
Alignment:
| Q |
17 |
acataatgttagatgataagcaaaatcagcttctacaagtatcaataatattcaacacaataaacatgatagtgaatgcaggtattgtggttgttggatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40269409 |
acataatgttagatgataagcaaaatcagcttctacaagtatcaataatattcaacacaataaacatgatagtgaatgcaggtattgtggttgttggatt |
40269310 |
T |
|
| Q |
117 |
gtttggcatgaatattcatattgatctcttcgatggacaacctcgtcaattttgggccacaattggaggcacggtcttaggttgcgtcttattattcctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40269309 |
gtttggcatgaatattcatattgatctcttcgatggacaacctcgtcaattttgggccacaattggaggcacggtcttaggttgcgtcttattattcctt |
40269210 |
T |
|
| Q |
217 |
gcttctatttggtttggtnnnnnnngatatttgttgtcttaatagagaaaattagattactaattcatgtgtaaattattagtaggagatacttgctgca |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40269209 |
gcttctatttggtttggtaaaaaaagatatttgttgtcttaatagagaaaattagattactaattcatttgtaaattattagtaggagatacttgctgca |
40269110 |
T |
|
| Q |
317 |
t |
317 |
Q |
| |
|
| |
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|
| T |
40269109 |
t |
40269109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 39623143 - 39622931
Alignment:
| Q |
17 |
acataatgttagatgataagcaaaatcagcttctacaagtatcaataatattcaacacaataaacatgatagtgaatgcaggtattgtggttgttggatt |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| ||| | ||||| ||| |||||| ||||||||||| | |
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| T |
39623143 |
acataatgttggatgataagcaaaatcagcttctacaagcatcaataatactcaacacaatgaacttcatagtcaatttgggtattctggttgttggagt |
39623044 |
T |
|
| Q |
117 |
gtttggcatgaatattcatattgatctcttcgatggacaacctcgtcaattttgggccacaattggaggcacggtcttaggttgcgtcttattattcctt |
216 |
Q |
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|
||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| | | ||||| |||||||||||||| |||||||||||| |
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| T |
39623043 |
gtttggcatgaatattcatattgatctctatcaaggacaacctagtcaattttgggccacaactagtggcacagtcttaggttgcgtgttattattcctt |
39622944 |
T |
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| Q |
217 |
gcttctatttggt |
229 |
Q |
| |
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| ||||||||||| |
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| T |
39622943 |
gtttctatttggt |
39622931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 39632693 - 39632481
Alignment:
| Q |
17 |
acataatgttagatgataagcaaaatcagcttctacaagtatcaataatattcaacacaataaacatgatagtgaatgcaggtattgtggttgttggatt |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| ||| | ||||| ||| |||||| ||||||||||| | |
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| T |
39632693 |
acataatgttggatgataagcaaaatcagcttctacaagcatcaataatactcaacacaatgaacttcatagtcaatttgggtattctggttgttggagt |
39632594 |
T |
|
| Q |
117 |
gtttggcatgaatattcatattgatctcttcgatggacaacctcgtcaattttgggccacaattggaggcacggtcttaggttgcgtcttattattcctt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| | | ||||| |||||||||||||| |||||||||||| |
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| T |
39632593 |
gtttggcatgaatattcatattgatctctatcaaggacaacctagtcaattttgggccacaactagtggcacagtcttaggttgcgtgttattattcctt |
39632494 |
T |
|
| Q |
217 |
gcttctatttggt |
229 |
Q |
| |
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| ||||||||||| |
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| T |
39632493 |
gtttctatttggt |
39632481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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