View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_1 (Length: 736)
Name: NF10052_low_1
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 307 - 735
Target Start/End: Original strand, 21900156 - 21900563
Alignment:
| Q |
307 |
aggagtgaaaattatggaaatataactaccaagtcattaaaagttgcattgtaaactcgtgattgagtgcgtgtttggattcacggtgaattttgcagaa |
406 |
Q |
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| T |
21900156 |
aggagtgaaaattatggaaatataactaccaagtcattaaaagttgcattgtaaattcgtga---------------------cggtgaattttgcagaa |
21900234 |
T |
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| Q |
407 |
tcttgcaaaaattacgaggattttgcaagcaagctcaccgtgattccaaacatacactgaatgtttaggttttgattggtttcnnnnnnnggatgtgtgt |
506 |
Q |
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| T |
21900235 |
tcttgcaaaaattacgaggattttgcaagcaagctcaccgtgattccaaacatacattgaatgtttaggttttgattggtttctttttttggatgtgtgt |
21900334 |
T |
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| Q |
507 |
ttttcggtgtagcatttttgatgaagtttcgatacggaaacggtggtgcaactgaaaatgggaatgttacttgtggggatcctcaccacgtttcaacaat |
606 |
Q |
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| T |
21900335 |
ttttctgtgtagcatttttgatgaagtttagatacggaaatggtggtgcaactgaaaatgggaatgttacttgtggggatcctcaccacgtttcaacaat |
21900434 |
T |
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| Q |
607 |
ggaagacaacaatagtagaggtaaggttttcataattgatggcttaatgtattgagttttgatgctaattatagtatggaatcgcgattatgaccgtgac |
706 |
Q |
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| T |
21900435 |
ggaagacaacaatagtagaggtaaggttttcataattgatggcttaatgtatcgagttttgatgctaattatagtatggaatcacgattatgaccgtgac |
21900534 |
T |
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| Q |
707 |
gtcaatttcgtttgatgtccatctcattg |
735 |
Q |
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| T |
21900535 |
gtcaagttcattttatgtctatctaattg |
21900563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 21899864 - 21900111
Alignment:
| Q |
15 |
agattttgtatgagaaagaagaagnnnnnnnncatggaagaagagttcgtggagattgaggttgaagaatcttctttgtgttttgatgatgagattgatt |
114 |
Q |
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| T |
21899864 |
agattttgtatgagaaagaagaagaaaaaaaacatggaagaagagttcgtggagattgaggttgaagaatcttctttatgttttgatgatgagattgatt |
21899963 |
T |
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| Q |
115 |
ttacttatgaatttgatgctcctatgttctatgattttacaacacaagaaacgcttttcgacgattgtgaagcagaacaatggtttgaatttgcacaaag |
214 |
Q |
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| T |
21899964 |
ttacttatgaatttgatgctcctatgttctatgattttacaacacaagaaacgcttttcgacgattgtgaagcagaacaatggtttgaatttgcacaaag |
21900063 |
T |
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| Q |
215 |
ttatccaccttcacgtaagaatttatttaaggaaaattactaaaccta |
262 |
Q |
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| T |
21900064 |
ttatccaccttcacgtaagaatttatttaaggaaaattattaaaccta |
21900111 |
T |
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