View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_10 (Length: 377)
Name: NF10052_low_10
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 42081220 - 42081571
Alignment:
| Q |
18 |
aatcttccctggttttcttgttacaagatgataataaccatgaggccttgccttgttattctcagtctgcaacttgtgccgctaa-atcatctggcatat |
116 |
Q |
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| T |
42081220 |
aatcttctctggttttcttgttagaagatgataaaaaccatgaggccttgccttgttattctcagtgtgcaacttgtgccgctaatatcatctggcatat |
42081319 |
T |
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| Q |
117 |
gaaagagaagtctcatgaaacactaataattacaaattttattaaccttgaaatatctggcctataatcgaggagctggataacatgtatacctggtttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |
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| T |
42081320 |
gaaagagaagtctcatgaaacactaataattacaaattttattaaccttgaaatatctggcctataatcgagaagctagataacatgcatacctggtttg |
42081419 |
T |
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| Q |
217 |
aaaaatgttttggatcatcctgcgaggcgattgctgtgctgcatcctccaaatgaagtagctcgtttgaggagagacgccaacccagagcacccaaattt |
316 |
Q |
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| T |
42081420 |
aaaaatgttttggatcatcctgcgaggcgattgctgtgctgcatcctccaactgaagtagctcgtttgaggagagacgccaacccagagcacccaaattt |
42081519 |
T |
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| Q |
317 |
tcttctgcttgcgttattgacttgactccaggaattggaattgcacctttgc |
368 |
Q |
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| T |
42081520 |
tcctctgcttgtgttattgacttgactccaggaattggaattgtacctttgc |
42081571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 233 - 368
Target Start/End: Original strand, 42079007 - 42079142
Alignment:
| Q |
233 |
atcctgcgaggcgattgctgtgctgcatcctccaaatgaagtagctcgtttgaggagagacgccaacccagagcacccaaattttcttctgcttgcgtta |
332 |
Q |
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|||||| |||| || | ||||||||||| |||||| ||||| |||| || ||| || ||||||||||| ||||||||||||||||| ||||| | | || |
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| T |
42079007 |
atcctgggaggtgacttctgtgctgcatactccaactgaagcagctggtctgatgaaagacgccaaccaagagcacccaaattttcctctgcctttgcta |
42079106 |
T |
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| Q |
333 |
ttgacttgactccaggaattggaattgcacctttgc |
368 |
Q |
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| T |
42079107 |
ttgacttgactccaggaattagagttgtacctttgc |
42079142 |
T |
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