View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_14 (Length: 322)
Name: NF10052_low_14
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 40127493 - 40127203
Alignment:
| Q |
19 |
cgattagcccaagtcgtggatcagatccggaatgtgatagaggccaatgaaggaaagggagagaaagatatgaggagtgtggtgttaaaaagctctacca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
40127493 |
cgattagcccaagtcgtggatcagatccggaatgtgatagaggccaatgaaggaaagggagataaagatatgaggagtgtggtgttaaaaagctccacca |
40127394 |
T |
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| Q |
119 |
ccgggcacagtcataccgaacggaggctccaccagatgatgtacgcagccggtgactacgagagttgtcatgcctgccacggggataatgacagtgagca |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40127393 |
ccgggcacagtcatactgaacggaggctccaccagatgatgtacgcagccagtgactacgagagttgtcatgcctgccacggggataatgacagtgagca |
40127294 |
T |
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| Q |
219 |
caaaaggcagtatgatgggacccatgtttcggtagatagataccaggggagagattactgggtggtgaatgtgagaagccaagatcgtcct |
309 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40127293 |
caaaaggcagtatgatgggacccatgtttcggtggatagataccaggggagagattactgggtggtgaatgtgagaagccgagatcgtcct |
40127203 |
T |
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