View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_19 (Length: 292)
Name: NF10052_low_19
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_19 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 2444004 - 2443725
Alignment:
| Q |
18 |
cttcaaaggatgaaaattactcatgatcatgctcgcctttatggcgaagacagttacatgattaatgtcggctcaatgcaagttaggtatatatatat-- |
115 |
Q |
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| T |
2444004 |
cttcaaaggatgaaaattactcatgatcatgctcgcctttatggcgactacagttacatgattaatgtcggctcaatgcaagttaggtatatatatatat |
2443905 |
T |
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| Q |
116 |
---ttttaatcaaattaactacgtatttatttagaaggtgttgcttatagatgatgataggttgaataacttggagaagtggatgtttgagtcaatttgg |
212 |
Q |
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| T |
2443904 |
tttttttaatcaaattaactacgtatttatttagaaggtgttgcttatagatgatgataggttgaataacttggagaagtggatgtttgagtcaatttgg |
2443805 |
T |
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| Q |
213 |
aggagcccggctcggttaaaagttgtggttttttcttggactcttcttctagactgtattccaacgtgttcaaatcttgc |
292 |
Q |
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| T |
2443804 |
aggagcccggctcggtcaaaagttgtggttttttcttggactcttcttctagactgtattccaacgtgttcaaatcttgc |
2443725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 46 - 265
Target Start/End: Complemental strand, 12220772 - 12220551
Alignment:
| Q |
46 |
atgctcgcctttatggcgaagacagttacatgattaatgtcggctcaatgcaagttaggtatata-----tatatttttaatcaaattaactacgtattt |
140 |
Q |
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| T |
12220772 |
atgctcgtctttatggctaagtcaattacatgattaatgtcggctcaatgcaggttacatatttactttttgtctttttaatcaaactaattacatattt |
12220673 |
T |
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| Q |
141 |
atttagaaggtgttgcttatagatgatgataggttgaataacttggagaagtggatgtttgagtcaatttggaggagcccggctcggttaaaagttgtgg |
240 |
Q |
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| T |
12220672 |
attcagaaggtgttgcatatagatgat---agattgaataacttggagaagtgggtttttgagtcaatttggaagagtccggctcggtcaaaagttgtag |
12220576 |
T |
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| Q |
241 |
ttttttcttggactcttcttctaga |
265 |
Q |
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| T |
12220575 |
ctttttcttggactcttcttctaga |
12220551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 7424906 - 7425104
Alignment:
| Q |
54 |
ctttatggcgaagacagttacatgattaatgtcggctcaatgcaagttaggtatatatatatt-----tttaatcaaattaactacgtatttatttagaa |
148 |
Q |
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| T |
7424906 |
ctttatggctaagacagttacatgattaatatcgtctcaatgcaagttacatatttattttttgtcgttttaatcaaactaattacatgcttattcagaa |
7425005 |
T |
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| Q |
149 |
ggtgttgcttatagatgatgataggttgaataacttggagaagtggatgtttgagtcaatttggaggagcccggctcggttaaaagttgtggttttttct |
248 |
Q |
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| T |
7425006 |
ggagttgcttatagatgat---agattgaataacttggagaagtgggtgtttgagtcaatttggaagagcccggctcggtcaaaagttgtggctttttct |
7425102 |
T |
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