View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10052_low_2 (Length: 650)
Name: NF10052_low_2
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 18 - 641
Target Start/End: Complemental strand, 40647501 - 40646878
Alignment:
| Q |
18 |
aactcgggcactgttcaagttcccacatttaccatacatgtcaagaatggcattgccaaccataaggtttgagtggaaaccatgtcgatagacaaatcca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40647501 |
aactcgggcactgttcaagttcccacatttaccatacatgtcaagaatggcattgccaaccataaggtttgagtggaaaccatgtcgatagacaaatcca |
40647402 |
T |
|
| Q |
118 |
tgaagctgtttccccatttcatgatccaaaaggccagcagacacatttatcatcaaaccaagagtgacatggtccaagtcctttacagtgtcaagcatca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40647401 |
tgaagctgtttccccatttcatgatccaaaaggccagcagacacatttatcatcaaaccaagagtgacatggtccaagtcctttacagtgtcaagcatca |
40647302 |
T |
|
| Q |
218 |
aacaaacaaaatctaatgcctcagaccatttaaagaatcgggtatatccagccaacatagcattccacgatatcacatttcgtacaggcatctgatcaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40647301 |
aacaaacaaaatctaatgcctcagaccatttaaagaatcgggtatatccagccaacatagcattccacgatatcacatttcgtacaggcatctgatcaaa |
40647202 |
T |
|
| Q |
318 |
aagctttcttgcgtcccaagttttcccactcattgcataccctgacacaatgcaagtccaacacactaaatctttcgaaccaagctgatgaaaaacccga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40647201 |
aagctttcttgcgtcccaagttttcccactcattgcataccctgacacaatgcaagtccaacacactaaatctttcgaaccaagctgatgaaaaacccga |
40647102 |
T |
|
| Q |
418 |
aaaccattctccaattcaccacacttgacatacatattgattagcgagctcgaaacaacattatcctcatgaagtccccatttcacaannnnnnnatgaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
40647101 |
aaaccattctccaattcaccacacttgacatacatattgattagcgagctcgaaacaacagtatcctcatgaagtccccatttcacaacccccccatgaa |
40647002 |
T |
|
| Q |
518 |
tttgcatcccttcctcaagtgcatgcatactagaacaagcaacaagagcattagagaatgtgaaattcaacggcttaactccatcagaaaacatgcgcgt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40647001 |
tttgcatcccttcctcaagtgcatgcatactagaacaagcaacaagagcattagagaatgtgaaattcaacggcttaactccatcagaaaacatgcgcgt |
40646902 |
T |
|
| Q |
618 |
gaacaacaaaacagcttcctttgc |
641 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
40646901 |
gaacaacaaaacagcttcctttgc |
40646878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University