View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_20 (Length: 276)
Name: NF10052_low_20
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 32751863 - 32751613
Alignment:
| Q |
11 |
agagaccacctgatcgaatactagtaaaaacaacataacataactgctaattactaataattaaaatttgcctatagnnnnnnnnn-----catatatgt |
105 |
Q |
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| T |
32751863 |
agagtccacctgatcgaatactagtaaaaacaacataac-----tgctaattactaataattaaaatttgcctatagaaagaaaaaaaaaacatatatgt |
32751769 |
T |
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| Q |
106 |
caaacttatcatgttatgtatgcagctagctggtttgagtggcacagatacaccagaatctcctctcattgaatatatctcaaattagaagatttaaagt |
205 |
Q |
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| T |
32751768 |
caa-cttatcatgttatgtatgcagctagctggtttgagtggcacagatacaccagaatctcctctcattgaatatatctcaaattagaagatttaaagt |
32751670 |
T |
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| Q |
206 |
tgatatcatgttaacctaccataattacttataactaaaattgaaaagggacaatta |
262 |
Q |
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| T |
32751669 |
tgatatcatgttaacctaccataattacttataactaaaattgaaaagggacaatta |
32751613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 32753077 - 32753003
Alignment:
| Q |
188 |
aattagaagatttaaagttgatatcatgttaacctaccataattacttataactaaaattgaaaagggacaatta |
262 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||| |
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| T |
32753077 |
aattagaagatttaaagttcatatcatgttaaactaccataattacttataacttaaattcaaaaggggcaatta |
32753003 |
T |
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