View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_22 (Length: 250)
Name: NF10052_low_22
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 42849007 - 42848777
Alignment:
| Q |
4 |
agagacacgcaatgaattgacaattcctagtaaagaagggaaagaattataagcctaatcaagttatatccatagagaatgcaagaatagaggtttcaca |
103 |
Q |
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| T |
42849007 |
agagacacgcaatgaattgacaattcctagtaaagaagggaaagaattataagcctaat-aagttatatccatagagaatgcaagaatagaggtttcaca |
42848909 |
T |
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| Q |
104 |
acagcaatggcctgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaatagagtaaatgcgttacagtggtgcttgcatctttgtgagct |
203 |
Q |
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| T |
42848908 |
acagcaatggcctgaaactcaccaaataggaaagtcaaaaatatgcagaaacagaaaatagagtaaatgtgttacagtggtgcttgcatctttgtgagct |
42848809 |
T |
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| Q |
204 |
tcagaacggccaagcatagctactagttaaat |
235 |
Q |
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| T |
42848808 |
tcagaacggccaagcatagctactagttaaat |
42848777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 42855648 - 42855475
Alignment:
| Q |
6 |
agacacgcaatgaattgacaattcctagtaaagaagggaaagaattataagcctaatcaagttatatccatagagaatgcaagaatagaggtttcacaac |
105 |
Q |
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| T |
42855648 |
agacacgcaatgaattgacaattcctagtaaagaagggaaagagttataagcctaatcaagttatatctttggggaatgcaagaatagaggtttcacaac |
42855549 |
T |
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| Q |
106 |
agcaatggcctgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaat-agagtaaatgcgttaca |
179 |
Q |
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| T |
42855548 |
agcaatggcctgaaattcacctaatgggagagtgaaaaatatgcagaaacagaaaataagagt-aatgcgttaca |
42855475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 42857164 - 42857084
Alignment:
| Q |
83 |
tgcaagaatagaggtttcacaacagcaatggcctgaaactcaccaaataggaaagttaaaaatatgcagaaacagaaaata |
163 |
Q |
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| T |
42857164 |
tgcaagaatagaggtttcacaacagcaatggcctgaaattcaccaaatgggagagtgaaaaatatgcagaaacagaaaata |
42857084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 42857227 - 42857184
Alignment:
| Q |
3 |
cagagacacgcaatgaattgacaattcctagtaaagaagggaaa |
46 |
Q |
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| T |
42857227 |
cagagactcgcaatgaattgacaattcctagtaaagaagggaaa |
42857184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 42861557 - 42861513
Alignment:
| Q |
13 |
caatgaattgacaattcctagtaaagaagggaaagaattataagc |
57 |
Q |
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| T |
42861557 |
caatgaattgtcagttcctagtaaagaagggaaatagttataagc |
42861513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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