View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_27 (Length: 202)
Name: NF10052_low_27
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 43759768 - 43759922
Alignment:
| Q |
31 |
tacaatgttaataagcaatcacatgcacgatgacaaactaaacacactcaacaatgaatacaaacacaacacataaagtttgtgaattggttttcctgga |
130 |
Q |
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| T |
43759768 |
tacaatattaataagcaatcacatgcatgatgacaaactaaacacactcaacaatgaatacaaacacaacacataaagtttgtgaattggttttcctgga |
43759867 |
T |
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| Q |
131 |
caagccacgagcgacagttaagtgtcgta-gaaagaataatagttaactaccgct |
184 |
Q |
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| T |
43759868 |
caagccatgagcgacagttaagtgtcgtaggggagaacaatagttaactaccgct |
43759922 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 35457744 - 35457892
Alignment:
| Q |
43 |
aagcaatcacatgcacgatgacaaactaaacacactcaacaatgaatacaaa---------cacaacacataaagtttgtgaattggttttcctggacaa |
133 |
Q |
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| T |
35457744 |
aagcaatcacatgcatgatgacacactaaacacacctaatgatgaatgcaaatagaacactcacaacacacaaagtttgtgaattggttttcttggacaa |
35457843 |
T |
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| Q |
134 |
gccacgagcgacagttaagtgtcgtagaa-agaataatagttaactacc |
181 |
Q |
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| T |
35457844 |
accatgaacgataattaggtgccgtagaagagaatgacagttaactacc |
35457892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 40247765 - 40247836
Alignment:
| Q |
31 |
tacaatgttaataagcaatcacatgcacgatgacaaactaaacacactcaacaatgaatacaaacacaacac |
102 |
Q |
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| T |
40247765 |
tacaatgtttatagacaatcacatgcatgatgacactctaaacacacccaataatgaattcaaacacaacac |
40247836 |
T |
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