View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_3 (Length: 557)
Name: NF10052_low_3
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 9660206 - 9660410
Alignment:
| Q |
14 |
catagggaaagaaaggaactgtgactatgactcataaactactacatcagcttttgattaccagttattgcttacaaattgtgctttgttattttaggaa |
113 |
Q |
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| T |
9660206 |
catagggaaagaaagcaactgtgactatgactcataaactactacatcagcttttggttaccagttattgctcacaaattgtgctttgttattttaggaa |
9660305 |
T |
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| Q |
114 |
aacatccactagagaaaaaggaaccataaattctgtct-------tgcttgtaactgagacatttggtctgccattgttcaagtaatcatattaataaaa |
206 |
Q |
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| T |
9660306 |
aacatccacta-agaacaaggaaccataaattttgtcttagattgtacttgtaactgagacatttggtcttccattgttcaagtaatcatattaacaaaa |
9660404 |
T |
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| Q |
207 |
ttgata |
212 |
Q |
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|||||| |
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| T |
9660405 |
ttgata |
9660410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 225 - 540
Target Start/End: Original strand, 9660506 - 9660816
Alignment:
| Q |
225 |
ttgtttcataatcacaattcaaatggtaaaaagatagtaaaaatatttgataggttagagtaaatttctaactcacaattcttcgtttctcca--cattt |
322 |
Q |
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| T |
9660506 |
ttgtttcataatcacaattcaaatgataaaaagat-gtaaaaatatttgataggttagagtaaatttctaactca--attcctcattttttttagcattt |
9660602 |
T |
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| Q |
323 |
attatgtatgaattttaccactaaannnnnnnnnnnnnnnnatatctgaagtctatgttcaacttttaatttgttgtatttacaaacactatgtactcac |
422 |
Q |
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| T |
9660603 |
attatgtgtgaattttactactaaactttttaaattgtt---taactgaagtctatgttctacttttaacttgt---atctacaaacactatgcactcat |
9660696 |
T |
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| Q |
423 |
atgagaattcctcaaagcatagccaatttcacaagtaataccatttttctcgtgtgcttgnnnnnnnc---gtaactccttggctacataatgagaaaaa |
519 |
Q |
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| T |
9660697 |
atgagaattgctcaaagcatagccaatttcacaagtactaccatttttcttgtgtgcttcaaaaaaacatagtaactcctt-gctatagaatgagaaaaa |
9660795 |
T |
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| Q |
520 |
cccttccaaaattcaagattt |
540 |
Q |
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| T |
9660796 |
cccttccaaaattcaagattt |
9660816 |
T |
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