View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_4 (Length: 550)
Name: NF10052_low_4
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 198 - 539
Target Start/End: Complemental strand, 19172701 - 19172360
Alignment:
| Q |
198 |
tgttgaaatcagtattcaacagacagaaacaacacacatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacac |
297 |
Q |
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| T |
19172701 |
tgttgaaatcagtattcaacagacagaaacaacacacatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacac |
19172602 |
T |
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| Q |
298 |
actcaagaacaatcacctcccattactccgtcgttctatctccggcgcctccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaa |
397 |
Q |
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| T |
19172601 |
actcaagaacaatcacctcccattactccgtcgttctatctccggcgactccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaa |
19172502 |
T |
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| Q |
398 |
tcttactaccacaccctcgacgcagctgcaaccacagacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatct |
497 |
Q |
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| T |
19172501 |
tcttactaccacaccctcgacgcagctgcaatcacagacccttctcaaatcctcaaccaagactggcataactccttagaaaagcctcttctttggatct |
19172402 |
T |
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| Q |
498 |
ctgacctccatcctttcatcttcaccaatcttgctcgttctt |
539 |
Q |
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| T |
19172401 |
ctgacctccatcctttcatcttcaccaatcttgctcgttctt |
19172360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 19172862 - 19172735
Alignment:
| Q |
20 |
taccttttctgttagttcagtttcacattttctgttataaccaactttgttcccattcattt-tatacatatatattgatcagaaccgtgtgaatcacac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| |
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| T |
19172862 |
taccttttctgttagttcagtttcacattttctgttataaccaactttgttcccattcatttatacatatatatattgatcagaaccgtgtgaatcacac |
19172763 |
T |
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| Q |
119 |
aaacaaaaacagttataactcaattctg |
146 |
Q |
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| T |
19172762 |
aaacaaaaacagttatcactcaattctg |
19172735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 19177961 - 19177901
Alignment:
| Q |
17 |
agttaccttttctgttagttcagtttcacattttctgttataaccaactttgttcccattca |
78 |
Q |
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| T |
19177961 |
agttaacttttctgttagttca-tttcacattttctgttataaccaactttgttcccattca |
19177901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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