View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_5 (Length: 542)
Name: NF10052_low_5
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Complemental strand, 53247649 - 53247135
Alignment:
| Q |
18 |
atatcaatcctaaaagaaacaccaatctataagcagtttattttgtggtgtcattatagagaactaatttgcctaggccaaacaccataaaacatcagac |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53247649 |
atatcaatcctaaaagaaacaccaatttataagcagtttaaattgtggtgtcattatagagaactaatttgcctaggccaaacaccataaaacatcggac |
53247550 |
T |
|
| Q |
118 |
gatgagcatttcaaaataaaaagtatcagcttttgttattttgcatcatagtaaaaaaggtttgttccatatttgtggcagtatacccaggctagcatcc |
217 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53247549 |
gaagagcatttaaaaataaaaagtatcagcttttgttattttgcatcatagtaaaaaaggtttgttccatatttgtggcagtatacccaggctagcatcc |
53247450 |
T |
|
| Q |
218 |
ccaatcagcaacatgcttccaattccatacaaatcactcccacaaaaggttatcaagctcaagccatttcaccaaatcaagtaagtcaaccatgtctttt |
317 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
53247449 |
ccagtcagcaacatgctcccaattccatacaaatcactcccacaaaaggttatcaagctcaagccattccaccaaatcaagtaagtcaactatgtctttt |
53247350 |
T |
|
| Q |
318 |
agtttctgcttaatttttatcatatcctcactcgttcagtactttctccctgtagttctccggtcagcataataatggtcagaagagtgttcaagagttg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53247349 |
agtttctgcttaatttttatcatatcctcactcgttcagtactctctctctgtagttctccggtcagcataataatggtcagaagagtgttcaagagttg |
53247250 |
T |
|
| Q |
418 |
gtgttagaatatttggctcttcccacaatcaggtgtattttaaaagttgttttattttcttttatttcattgactcctataacatataactaactgttat |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53247249 |
gtgttagaatatttggctcttcccacaatcaggtgtattttaaaagttgttttgttttcttttatttcattgactcctataacatataactaactgttat |
53247150 |
T |
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| Q |
518 |
ttctcggagcctttg |
532 |
Q |
| |
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||||||||||||||| |
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| T |
53247149 |
ttctcggagcctttg |
53247135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 53254923 - 53255085
Alignment:
| Q |
18 |
atatcaatcctaaaagaaacaccaatctataagcagtttattttgtggtgtcattatagagaactaatttgcctaggccaaacaccataaaacatcagac |
117 |
Q |
| |
|
||||||||| |||||||||||||||| || ||||||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
53254923 |
atatcaatcttaaaagaaacaccaatttaatagcagtttattttatgctgtcatcataaagaactaatttgcctaggccaaacaccataaaacataagac |
53255022 |
T |
|
| Q |
118 |
gatgagcatttcaaaataaaaagtatcagcttttgttattttgcatcatagtaaaaaaggttt |
180 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||| |
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| T |
53255023 |
gaagagcatttcaaaatgaaaagtatcagcttttgttatttggaatcatagtaaaacaggttt |
53255085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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