View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_6 (Length: 456)
Name: NF10052_low_6
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 44964480 - 44964651
Alignment:
| Q |
17 |
caaatctcagtttccaaaataatctgtnnnnnnnctgtaaggttttgttcatcataactctgtatccaaagactaagctgagacttactgtacactacac |
116 |
Q |
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| T |
44964480 |
caaatctcagtttccaaaataatctgtaaaaaaactgtaaggttttgttcatcataactctgtatccaaagactaagctgagacttactgtacactacac |
44964579 |
T |
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| Q |
117 |
agtagccctacctcacttttcttctctataccccatggctcccccacacatgggtcactcttctctttcagc |
188 |
Q |
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| T |
44964580 |
agtagccctacctcacttttcttctcaataccccatggctcccccacacatgggtcactcttctctttcagc |
44964651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 44964825 - 44964918
Alignment:
| Q |
342 |
ccttacattttgttcattcaccaaactgtccttataaaaccaaaactcaacaagaaatttgaacatacatactagcatttcacctaaacactat |
435 |
Q |
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| T |
44964825 |
ccttacattttgttcattcaccaaactgtccttataaaaccaaaactcaacaacaaatttgaacatacacactagcatttcacctaaacactat |
44964918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 44964729 - 44964789
Alignment:
| Q |
266 |
ctccttcttattatgattctcc---taataaagcaccactttcaatgcattgctttaaact |
323 |
Q |
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| T |
44964729 |
ctccttcttattatgattctcctcctaataaagcaccactttcaatgcattgctttaaact |
44964789 |
T |
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