View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_7 (Length: 443)
Name: NF10052_low_7
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 35371774 - 35372018
Alignment:
| Q |
18 |
gtgtgttatatataacatgagaaaagtgttgagttattgtgccacaagtaaaccacacaagaagtgtgtatgttttgcttaaggtgtgagcatggctatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35371774 |
gtgtgttatatataacatgagaaaagtgttgagttattgtgccacaagtaaaccacacaagaagtgtgtatg-tttgcttaaggtgtgagcatggctcct |
35371872 |
T |
|
| Q |
118 |
tgcctgcatgtgtaatgggaacttgtgcagccaaattggcaattgtctttacaattcagcatacacgttggtaaaagcaacaaagaatcaagaatattga |
217 |
Q |
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||| | |||||||||||||| |||||||||| ||||||| || ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| |
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| T |
35371873 |
tgcttccatgtgtaatgggatcttgtgcagcatcattggcatttctctttacaattcagcttacacgttgataaaagcaacaaagaatcaagaa---tga |
35371969 |
T |
|
| Q |
218 |
caaaatagaaaatattggatgtagaaagtggtaggacaagttgattgattc |
268 |
Q |
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| T |
35371970 |
ctaaatag--aatgttggatgtagaaagtggaaggacaagttgattgattc |
35372018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 35355975 - 35356142
Alignment:
| Q |
60 |
cacaagtaaaccacacaagaagtgtgtatgttttgcttaaggtgtgagcatggctatgtgcctgcatgtgtaatgggaacttgtgcagccaaattggcaa |
159 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| | | |||||||||||| |||||||| |
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| T |
35355975 |
cacaagtaaaccacacaagaagtgtgtatgttt-gcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaa |
35356073 |
T |
|
| Q |
160 |
ttgtctttaca-attcagcatacacgttggtaaaagcaacaaagaatcaagaatattgacaaaatagaa |
227 |
Q |
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||||||||||| ||||||| |||||||||| || |||| | |||||||||||||||||||||||||||| |
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| T |
35356074 |
ttgtctttacacattcagcttacacgttggaaatagcagctaagaatcaagaatattgacaaaatagaa |
35356142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 227
Target Start/End: Complemental strand, 35343339 - 35343157
Alignment:
| Q |
44 |
tgttgagttattgtgccacaagtaaaccacacaagaagtgtgtatgttttgcttaaggtgtgagcatggctatgtgcctgcatgtgtaatgggaacttgt |
143 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| | |||| ||||||||||||||||||| | ||| |
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| T |
35343339 |
tgttgagttattccaccacaattaaaccacacaagaagtgtgtatgttta-cttaaggtgtgagctttgctacgtgcctgcatgtgtaatggcatattgg |
35343241 |
T |
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| Q |
144 |
gcagccaaattggcaattgtctttacaattcagcatacacgttggtaaaagcaacaaagaatcaagaatattgacaaaatagaa |
227 |
Q |
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||||||| |||||||||||||||||||||||||| || | ||||| || |||| |||||||||||||||||||||||||||||| |
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| T |
35343240 |
gcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaaaatagaa |
35343157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 35374603 - 35374768
Alignment:
| Q |
60 |
cacaagtaaaccacacaagaagtgtgtatgttttgcttaaggtgtgagcatggctatgtgcctgcatgtgtaatgggaacttgtgcagccaaattggcaa |
159 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| | | |||||||||||| |||||||| |
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| T |
35374603 |
cacaagcaaaccacacaagaagtgtgtatgttt-gcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaa |
35374701 |
T |
|
| Q |
160 |
ttgtctttacaattcagcatacacgttggtaaaagcaacaaagaatcaagaatattgacaaaatagaa |
227 |
Q |
| |
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|||||||||| |||||||||||||||||| || |||| | |||||||||||||||||||||||||||| |
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| T |
35374702 |
ttgtctttac-attcagcatacacgttggaaatagcagctaagaatcaagaatattgacaaaatagaa |
35374768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 60 - 213
Target Start/End: Original strand, 35346345 - 35346499
Alignment:
| Q |
60 |
cacaagtaaaccacacaagaagtgtgtatgt-tttgcttaaggtgtgagcatggctatgtgcctgcatgtgtaatgggaacttgtgcagccaaattggca |
158 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||| ||||||| |
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| T |
35346345 |
cacaagtaaaccacacaagaagtgtgtgtgtgtttgcttaaggtgtgagcatggctcgatgcctgcatgtgcaatgggatcttgtgcagccacattggca |
35346444 |
T |
|
| Q |
159 |
attgtctttacaattcagcatacacgttggtaaaagcaacaaagaatcaagaata |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| ||| || ||||||||||||| |
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|
| T |
35346445 |
attgtctttacaattcagcttacacgttggaaaatgcagcatagaatcaagaata |
35346499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 59 - 213
Target Start/End: Original strand, 35364638 - 35364791
Alignment:
| Q |
59 |
ccacaagtaaaccacacaagaagtgtgtatgttttgcttaaggtgtgagcatggctatgtgcctgcatgtgtaatgggaacttgtgcagccaaattggca |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||||| |
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| T |
35364638 |
ccacaagtaaaccacacaagaagtgtgtatgttt-gcttaaggtgtgagcatggctccttgcttgcatgtgtaatgggatcttgtgcagccacattggca |
35364736 |
T |
|
| Q |
159 |
attgtctttacaattcagcatacacgttggtaaaagcaacaaagaatcaagaata |
213 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||| | ||||||||||||||| |
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| T |
35364737 |
tttgtctttacaattcagcgtacatgttgggaaaagaagaaaagaatcaagaata |
35364791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 35335832 - 35335994
Alignment:
| Q |
60 |
cacaagtaaaccacacaagaagtgtgtatgttttgcttaaggtgtgagcatggctatgtgcctgcatgtgtaatgggaacttgtgcagccaaattggcaa |
159 |
Q |
| |
|
|||||| ||||||| || ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| | |||||| ||||| |||||||| |
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| T |
35335832 |
cacaagcaaaccacgcaggaagtgtgtgtgttt-gcttaaggtgtgagcatggctcggtgcctgcatgtgtaatggcatcttgtgtagccacattggcaa |
35335930 |
T |
|
| Q |
160 |
ttgtctttacaattcagcatacacgttggtaaaagcaacaaagaatcaagaatattgacaaaata |
224 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||| | ||||||||||||||||||||||||||| |
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|
| T |
35335931 |
ttgtctttacaattcaacttacacgttgg-aaaagaagcaaagaatcaagaatattgacaaaata |
35335994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 35368450 - 35368617
Alignment:
| Q |
60 |
cacaagtaaaccacacaagaagtgtgtatgttttgcttaa-ggtgtgagcatggctatgtgcctgcatgtgtaatgggaacttgtgcagccaaattggca |
158 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||| || |||||||||||| ||||||||||||||||||| | ||| ||||||| ||||||| |
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| T |
35368450 |
cacaagcaaaccacacaagaagtgtgtatgttt-gcttaaaggaatgagcatggctacgtgcctgcatgtgtaatggcatattgggcagccacattggca |
35368548 |
T |
|
| Q |
159 |
attgtctttacaattcagcatacacgttggtaaaagcaacaaagaatcaagaatattgacaaaatagaa |
227 |
Q |
| |
|
||||||||||||||||||| || | ||||| || |||| |||||||||||||||||||||||||||||| |
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|
| T |
35368549 |
attgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaaaatagaa |
35368617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 60 - 227
Target Start/End: Complemental strand, 35348001 - 35347829
Alignment:
| Q |
60 |
cacaagtaaaccacacaagaagtgtgtatgttttgcttaaggtgtgagcatggctatgtgcctgcatgtgtaat--gggaacttgtgcagccaaattggc |
157 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||| |||||| |
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|
| T |
35348001 |
cacaagcaaaccacacaagaagtgtgtaagttt-gcttaaggtatgagcatggctacgtgcctgcatgtgtaatatggggtcttgtgcagccacattggc |
35347903 |
T |
|
| Q |
158 |
aattgtctttacaattcagcata----cacgttggtaaaagcaacaaagaatcaagaatattgacaaaatagaa |
227 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | ||||| | |||||| ||||||||||||||||||||||| |
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|
| T |
35347902 |
aattgtctctacaattcagcatatatacacgtatggaaaagaagcaaagactcaagaatattgacaaaatagaa |
35347829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 35351412 - 35351579
Alignment:
| Q |
60 |
cacaagtaaaccacacaagaagtgtgtatgttttgcttaaggtgtgagcatggctatgtgcctgcatgtgtaatgggaacttgtgcagccaaattggcaa |
159 |
Q |
| |
|
|||||| |||||| || ||||||||||| ||| ||| |||||||||||||||||| |||| ||||||||||||| | |||||||||||| |||||||| |
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| T |
35351412 |
cacaagcaaaccatgcaggaagtgtgtatcttt-gctaaaggtgtgagcatggctacgtgctagcatgtgtaatggaatcttgtgcagccacattggcaa |
35351510 |
T |
|
| Q |
160 |
ttgtctttacaattcagcatacacgttggtaaaagcaac-----aaagaatcaagaatattgacaaaat |
223 |
Q |
| |
|
|||| |||| || ||||||| |||||||| | ||||| | ||||||||||||||||||| ||||| |
|
|
| T |
35351511 |
ttgtttttataagtcagcatgcacgttggaagaagcagcaaattaaagaatcaagaatattgaaaaaat |
35351579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 35372160 - 35372216
Alignment:
| Q |
371 |
ggatattacaacttgttgaaacactatattgtgggccccagttttatacagtagtat |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
35372160 |
ggatattacaacttgttgaaacactatattgtgggtcccagttttatacagtagtat |
35372216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 35341070 - 35341173
Alignment:
| Q |
130 |
taatgggaacttgtgcagccaaattggcaa--ttgtctttacaattcagcatacacgttggtaaaagcaacaaagaatcaag----aatattgacaaaat |
223 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||| || ||| ||||| |||||||||||||| |
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|
| T |
35341070 |
taatgggatcttgtgcagccacattggcaaaattgtctttacaattcagcatacacgttggaagaagcagcatagattcaagaattaatattgacaaaat |
35341169 |
T |
|
| Q |
224 |
agaa |
227 |
Q |
| |
|
|||| |
|
|
| T |
35341170 |
agaa |
35341173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 35368846 - 35368900
Alignment:
| Q |
373 |
atattacaacttgttgaaacactatattgtgggccccagttttatacagtagtat |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
35368846 |
atattacaacttgttgaaacactatattgtgggtccaagttttatacagtagtat |
35368900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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