View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10052_low_9 (Length: 383)
Name: NF10052_low_9
Description: NF10052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10052_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 6094294 - 6094660
Alignment:
| Q |
17 |
acaatatgcatgtatagagttgtattcttataaaaatgatgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094294 |
acaatatgcatgtatagagttgtattcttataaaaatgatgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgattt |
6094393 |
T |
|
| Q |
117 |
ttaaattaagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttcaataaaggatatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094394 |
ttaaattaagttatctaatatgaatttccctctacttgattcatctttataggaaaaccaaaatggacaattttgtgcatgagcttcaataaaggatatc |
6094493 |
T |
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| Q |
217 |
aaaatctcacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa------------------gatgtgttgat |
297 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6094494 |
aaaatctcacaaaattcaatatagtctttctcatttgttttgaaatccaacattactaaaaaactacgaaaagaggtatgctagtacctgatgtgttgat |
6094593 |
T |
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| Q |
298 |
gcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggattt |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094594 |
gcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggattt |
6094660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 44188132 - 44188508
Alignment:
| Q |
17 |
acaatatgcatgtatagagttgtattcttataaaaatga-tgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgatt |
115 |
Q |
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|||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44188132 |
acaatatggatgtatagagtagtattcttataaaaatgactgtgtggccttcactctatgtgtcacattcgaaattcaatgcttttgtttagacttgatt |
44188231 |
T |
|
| Q |
116 |
tttaaattaagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttcaataaaggatat |
215 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44188232 |
tttaaattaagttatctaatttgaatttccctctaattgattcatttttataggaaaaccaaaatggacaattttgtgcatgagcttcaataaaggatat |
44188331 |
T |
|
| Q |
216 |
caaaatctcacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa------------------gatgtgttga |
296 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
44188332 |
caaaatctcacaaaattcaatatagtctttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtacctgatgtattga |
44188431 |
T |
|
| Q |
297 |
tgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttg |
373 |
Q |
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||||||| |||||| | ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44188432 |
tgcataaatcaaagcctattcacttcgcatagcagcaatttgtctgttcaacaattttgcttggatttgctcctttg |
44188508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 32727259 - 32727635
Alignment:
| Q |
17 |
acaatatgcatgtatagagttgtattcttataaaaatga-tgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgatt |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32727259 |
acaatatgcatgtatagagtagtattcttataaaaatgactgtgtggccttcactctatgtgtcacattcgaaattcaatgcttttgtttagacttgatt |
32727358 |
T |
|
| Q |
116 |
tttaaattaagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttcaataaaggatat |
215 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32727359 |
tttaaattaagttatctaatttgaatttccctctaattgattcatttttataggaaaaccaaaatggacaattttgtgcatgagcttcaataaaggatat |
32727458 |
T |
|
| Q |
216 |
caaaatctcacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa------------------gatgtgttga |
296 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
32727459 |
caaaatctcacaaaattcaatatagtctttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtacctgatgtattga |
32727558 |
T |
|
| Q |
297 |
tgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttg |
373 |
Q |
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||||||| |||||| | ||| |||| ||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
32727559 |
tgcataaatcaaagcctattcacttcgcatagcagcaatttgtctgttaaacaattttgcttggatttgctcctttg |
32727635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 287 - 373
Target Start/End: Complemental strand, 43095660 - 43095574
Alignment:
| Q |
287 |
gatgtgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttg |
373 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
43095660 |
gatgtgttgatgcataagccaaagccttttctcttctcatagcagcaatttgtctattcaacaatcttgcttggatttgctcctttg |
43095574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 43095724 - 43095684
Alignment:
| Q |
241 |
ttttctcatttgtattgaaatccaacattactaaaaaacta |
281 |
Q |
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||||||||||||||||||||| || ||||||||||| |||| |
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| T |
43095724 |
ttttctcatttgtattgaaattcagcattactaaaatacta |
43095684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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