View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10053_high_1 (Length: 579)
Name: NF10053_high_1
Description: NF10053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10053_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 962457 - 962781
Alignment:
| Q |
1 |
aacacattattaatcttttttatcttttgctaactactattctaaagatttatattatacacaatgtctttgaagatagcagccgaaaattggcaaaaac |
100 |
Q |
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| T |
962457 |
aacacattattaatcttttttatcttttgctaactaccattctaaagatttatattatacacaatgtctttgaagatagcagctgaaaattggcaaaaac |
962556 |
T |
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| Q |
101 |
catcatcaaagaaggttgaagaggcagtgatagagataagaagttatgatgaagagaaacacaaagtgggagtagaaaaattggagaggctttgtgaggt |
200 |
Q |
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| T |
962557 |
catcatcaaagaaggttgaagaggcagtgatagtgataagaagttatgatgaagagaaacacaaagtgggagtagaaaaattggagaggctttgtgaggt |
962656 |
T |
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| Q |
201 |
tggacaaagaggaaaaccttctcttgttactgacctattgggtgatcctatatgcagaattcgtcactttcaattacatgttatgctggtaattactata |
300 |
Q |
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| T |
962657 |
tggacaaagaggaaaaccttctcttgttactgacctattgggtgatcctatatgtagaattcgtcactttcaattacatgttatgctggtaattactata |
962756 |
T |
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| Q |
301 |
tcttatcttattatactcataactg |
325 |
Q |
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| T |
962757 |
tcttatcttattatactcataactg |
962781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 360 - 566
Target Start/End: Original strand, 962816 - 963021
Alignment:
| Q |
360 |
aaagttgatcgagaaggagaaattattataaaataaagtgacagtaatgactattttacaactatcctcgaagatatttgaannnnnnnncttactgcga |
459 |
Q |
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| T |
962816 |
aaagttgatcgagaaggagaaattattataaaataaagtgacagtaatgactattttacaactatcctcgaagagatttgaattttttttcttactgcga |
962915 |
T |
|
| Q |
460 |
gctaatatctcgttgacacattatcttgaagttgaatcatataacnnnnnnnngattatattaacatataaatgtgtagactaagagttgacacactata |
559 |
Q |
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| T |
962916 |
gctaatatctcatagacacattatcttgaagttgaatcatataac-aaaaaaagattatattaacatataaatgtgtagactaagagttgacacactata |
963014 |
T |
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| Q |
560 |
ttgatgt |
566 |
Q |
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| T |
963015 |
ttgatgt |
963021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 48727624 - 48727580
Alignment:
| Q |
377 |
agaaattattataaaataaagtgacagtaatgactattttacaac |
421 |
Q |
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| T |
48727624 |
agaaattattatgaactaaagtgacattaatgactattttacaac |
48727580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 33998717 - 33998763
Alignment:
| Q |
376 |
gagaaattattataaaataaagtgacagtaatgactattttacaact |
422 |
Q |
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| T |
33998717 |
gagaaattactattaattaaagtgacattaatgactattttacaact |
33998763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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