View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10053_high_2 (Length: 485)
Name: NF10053_high_2
Description: NF10053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10053_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 13077509 - 13077058
Alignment:
| Q |
16 |
acatcaaagagaaccagaagaattcacttctaaaattgagttggattcacctactacatttgaaaaacctccaagnnnnnnngttgaaaggaaagaggct |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13077509 |
acatcaaagagaaccagaagaattcacttctaaaattgagttggattcacctactacatttgaaaaacctccaagaaaaaaagttgaaaggaaagaggct |
13077410 |
T |
|
| Q |
116 |
catgaatttacaaggccaaaaaacatgagcaatgaaattccaaaagtagaagaagtacaagaagacaaagaggtggaaaggcacattcatttaccagaag |
215 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13077409 |
catgaatttacaaggccaaaaatcatgagcagtgaaattccaaaagtagaagaagtacaagaagacaaagaggtggaaaggcacattcatttaccagaag |
13077310 |
T |
|
| Q |
216 |
caagcatatctaaagaagaaagaacacaagttacaactactcgttcaaaagaaaaagatagagttgaaccaaaaggtgaggttggtatgccacaagaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13077309 |
caagcatatctaaagaagaaagaacacaagttacaactactcgttcaaaagaaaaagatagagttgaaccaaaaggtgaggttggtatgccacaagaaaa |
13077210 |
T |
|
| Q |
316 |
tcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcagataaagtggttcaacaatttgaagttaaagga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13077209 |
tcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcagataaagtggttcaacaatttgaagttaaagga |
13077110 |
T |
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| Q |
416 |
gaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtcagaag |
467 |
Q |
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| T |
13077109 |
gaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtcagaag |
13077058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 13073305 - 13072854
Alignment:
| Q |
16 |
acatcaaagagaaccagaagaattcacttctaaaattgagttggattcacctactacatttgaaaaacctccaagnnnnnnngttgaaaggaaagaggct |
115 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13073305 |
acatcaaagataaccagaagaattcacttttaaaattgagttggattcatctactacatttgaaaaacctccaagaaaaaaagttgaaaggaaagaggct |
13073206 |
T |
|
| Q |
116 |
catgaatttacaaggccaaaaaacatgagcaatgaaattccaaaagtagaagaagtacaagaagacaaagaggtggaaaggcacattcatttaccagaag |
215 |
Q |
| |
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|||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13073205 |
catgaatttacaaggccattaatcattagcattgaaattccaaaagtagaagaagtacaagaagacaaagaggtggaaaggcacattcatttaccagaag |
13073106 |
T |
|
| Q |
216 |
caagcatatctaaagaagaaagaacacaagttacaactactcgttcaaaagaaaaagatagagttgaaccaaaaggtgaggttggtatgccacaagaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13073105 |
caagcatatctaaagaagaaagaacacaagttacaactactcgttcaaaagaaaaagatagagttgaaccaaaaggtgaggttggtatgccacaagaaaa |
13073006 |
T |
|
| Q |
316 |
tcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcagataaagtggttcaacaatttgaagttaaagga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13073005 |
tcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcagataaagtggttcaacaatttgaagttaaagga |
13072906 |
T |
|
| Q |
416 |
gaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtcagaag |
467 |
Q |
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| T |
13072905 |
gaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtcagaag |
13072854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 190 - 463
Target Start/End: Complemental strand, 13072341 - 13072068
Alignment:
| Q |
190 |
ggaaaggcacattcatttaccagaagcaagcatatctaaagaagaaagaacacaagttacaa------ctactcgttcaaaagaaaaagatagagttgaa |
283 |
Q |
| |
|
|||||||||||||| | |||| ||||||| ||| |||||||||| |||||| |||||||| |||||| |||||||||||| |||||||||| |
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| T |
13072341 |
ggaaaggcacattcttgtacccgaagcaaccatctctaaagaag---gaacacgagttacaattacaactactcattcaaaagaaaattgtagagttgaa |
13072245 |
T |
|
| Q |
284 |
ccaaaaggtgaggttggtatgccacaagaaaatcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcag |
383 |
Q |
| |
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|||||||| || |||||| ||||| | ||||||||| || |||||||||||||||||| | |||| || || |||| | |||||||| | ||||| |
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| T |
13072244 |
ccaaaaggcgaaattggtaagccaccaaaaaatcaaactccatctccaaaagaaccatttcagtccacagaaggcagtaca---ttagaagctgtagcag |
13072148 |
T |
|
| Q |
384 |
ataaagtggttcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtca |
463 |
Q |
| |
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|||||| || |||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13072147 |
ataaagcggctcaacaatttgaagttgaagaaaaagagaaaacaaagaaaaaggactccaaaatggatgttcaagagtca |
13072068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 190 - 463
Target Start/End: Complemental strand, 13076545 - 13076272
Alignment:
| Q |
190 |
ggaaaggcacattcatttaccagaagcaagcatatctaaagaagaaagaacacaagttacaa------ctactcgttcaaaagaaaaagatagagttgaa |
283 |
Q |
| |
|
|||||||||||||| | |||| ||||||| ||| |||||||||| |||||| |||||||| |||||| |||||||||||| |||||||||| |
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| T |
13076545 |
ggaaaggcacattcttgtacccgaagcaaccatctctaaagaag---gaacacgagttacaattacaactactcattcaaaagaaaattgtagagttgaa |
13076449 |
T |
|
| Q |
284 |
ccaaaaggtgaggttggtatgccacaagaaaatcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcag |
383 |
Q |
| |
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|||||||| || |||||| ||||| | ||||||||| || |||||||||||||||||| | |||| || || |||| | |||||||| | ||||| |
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| T |
13076448 |
ccaaaaggcgaaattggtaagccaccaaaaaatcaaactccatctccaaaagaaccatttcagtccacagaaggcagtaca---ttagaagctgtagcag |
13076352 |
T |
|
| Q |
384 |
ataaagtggttcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtca |
463 |
Q |
| |
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|||||| || |||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13076351 |
ataaagaggctcaacaatttgaagttgaagaaaaagagaaaacaaagaaaaaggactccaaaatggatgttcaagagtca |
13076272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 246 - 463
Target Start/End: Complemental strand, 13065528 - 13065314
Alignment:
| Q |
246 |
ttacaactactcgttcaaaagaaaaagatagagttgaaccaaaaggtgaggttggtatgccacaagaaaatcaaaatctgtctccaaaagaaccatttga |
345 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||| || |||||| ||||| | ||||||||| || |||||||||||||||||| | |
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|
| T |
13065528 |
ttacaactactcattcaaaagaaaattgtagagttgaaccaaaaggcgaaattggtaagccaccaaaaaatcaaactccatctccaaaagaaccatttca |
13065429 |
T |
|
| Q |
346 |
ttccatagtgggaagtagaatattagaagcagcagcagataaagtggttcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaa |
445 |
Q |
| |
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|||| || || |||| | |||||||| | ||||||||||| || |||||||||||||||| ||| | |||| |||||||||||||||||||||||| |
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| T |
13065428 |
gtccacagaaggcagtaca---ttagaagctgtagcagataaagcggctcaacaatttgaagttgaagaaaaagagaaaacaaagaaaaaggactccaaa |
13065332 |
T |
|
| Q |
446 |
atgtctgttcaagagtca |
463 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
13065331 |
atggatgttcaagagtca |
13065314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 13064866 - 13064797
Alignment:
| Q |
394 |
tcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtca |
463 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||| ||| |||||||| ||||||||||||| |
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|
| T |
13064866 |
tcaacaatttgaagttgaaagagaagaaaaaacaaagaaaagggaatccaaaatagatgttcaagagtca |
13064797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 13071620 - 13071551
Alignment:
| Q |
394 |
tcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtca |
463 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
13071620 |
tcaacaatttgaagttgaaagagaagaaaaaacaaagaaaagggaatccaaaatagatgttcaagagtca |
13071551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 13072413 - 13072360
Alignment:
| Q |
394 |
tcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaat |
447 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
13072413 |
tcaacaacttgaagttgaaggagaagaaaaaacaaagaaaaaggaatccaaaat |
13072360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 463
Target Start/End: Complemental strand, 13075824 - 13075755
Alignment:
| Q |
394 |
tcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtca |
463 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
13075824 |
tcaacaatttgaagttgaaagagaagaaaaaacaaagaaaagggaatccaaaatagatgttcaagagtca |
13075755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 13076617 - 13076564
Alignment:
| Q |
394 |
tcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaat |
447 |
Q |
| |
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||||||| |||||||| |||||||||| ||||||||||||| ||| |||||||| |
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| T |
13076617 |
tcaacaacttgaagttgaaggagaagaaaaaacaaagaaaatggaatccaaaat |
13076564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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