View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10053_high_4 (Length: 428)
Name: NF10053_high_4
Description: NF10053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10053_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Complemental strand, 12731545 - 12731140
Alignment:
| Q |
20 |
tgttgctaacatttctcatatacatttaagctaacttacacctcgggatgaaagcatgttagttgtgccgctggaatgaaaccttcagtcgagcgtaatc |
119 |
Q |
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| T |
12731545 |
tgttgctaacatttctcgtatacatttaagctaacttacacctcgggatgaaagcatgttagttgtgccgctggaatgaaaccttcagtcgagcataatc |
12731446 |
T |
|
| Q |
120 |
cacatatttgaaaatcctccactcgaaagcctccccttcagcgcaagtcaaacatccagagttagttccatcaaatgcacatcagaccataccctcttgt |
219 |
Q |
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| T |
12731445 |
cacatatttgaagatcctccactcggaagcctccccttcagtgcaagtcaaatgtccagagttagttccatcaaatgcacatcagaccataccctcttgt |
12731346 |
T |
|
| Q |
220 |
gcaagtgcatttgatatctacattcattagatgaagactagtcaacttcgtcaac---------atgtcgaatgtaaaacgtgcacgaagactctgcttg |
310 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12731345 |
gcaagtgcatttgatatctacatccaatagatgaagactagtcaacttcgtcaacatgatcaatatgtcgaatgtaaaacgtgcacgaagactctgcttg |
12731246 |
T |
|
| Q |
311 |
taataaatctgataattttgtctagtcaagagtaatcgtaaccaaccctaatgtataatctgatggtctaa-ctcaccacaatacatcctctatttttta |
409 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12731245 |
taataaatctgataattttgtctggtcaagagtaatcgtaaccaaccctaatgtataatctgatggtctaacctcaccacaatacatcctctatttttta |
12731146 |
T |
|
| Q |
410 |
gcgcct |
415 |
Q |
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|||||| |
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| T |
12731145 |
gcgcct |
12731140 |
T |
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