View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10053_high_6 (Length: 395)
Name: NF10053_high_6
Description: NF10053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10053_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 14800388 - 14800749
Alignment:
| Q |
18 |
catcacgttacaagttgtgtgctcaatttgtgacacattagaaaattgtcatgcggcaccatatattagtgatttatttctctaaagtcaatcatccatg |
117 |
Q |
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| T |
14800388 |
catcacgttacaagttgtgtgctcaatttgtgacacatcagaaaattgtcatgcggcaccatatattagtgatttatttctctaaagtcaatcatccatg |
14800487 |
T |
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| Q |
118 |
tacaatgccggctagatatagaaatttaaaatagccataaaagtcaactatcctaattcctaagagccaaaaccatatattaattggtctaaatgaagat |
217 |
Q |
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| T |
14800488 |
tacaatgccggctagatatagaaatttaaaatagccataaaagtcaactatcctaattcctaagagccaaaaccatatattaattggtctaaatgaagat |
14800587 |
T |
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| Q |
218 |
attttattacnnnnnnntcttagttgatgttgaggtagaaacaacattactcaaagcctcttttctctataaatagtnnnnnnnntcacactcattcacc |
317 |
Q |
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| T |
14800588 |
tttttattaccaaaaaatcttagttgatgttgagatagaaacaacattactcaaagcctcttttctctataaatagtaaaaaaaatcacacacattcacc |
14800687 |
T |
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| Q |
318 |
attctcataaaacatcaattgaagtaagcattgcacagaaacttgaagaatattttcttttc |
379 |
Q |
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| T |
14800688 |
attctcataaaacaccaattgaagtaagcattgcacagaaacttgaagaatattttcttttc |
14800749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 14804206 - 14804335
Alignment:
| Q |
93 |
atttctctaaagtcaatcatccatgtacaatgccggctag-atatagaaatttaaaatagccataaaagtc-aactatcctaattcctaagagccaaaac |
190 |
Q |
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| T |
14804206 |
atttctctgaagtcaatcatccatttataatgcaggctagaatttagaaatttagaatagccatgaaagtcaaattatcctaatttctaagagcaaaaac |
14804305 |
T |
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| Q |
191 |
catatattaattggtctaaatgaagatatt |
220 |
Q |
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| T |
14804306 |
aatacattaattgatctaaatgaggatatt |
14804335 |
T |
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