View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10053_high_9 (Length: 299)

Name: NF10053_high_9
Description: NF10053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10053_high_9
NF10053_high_9
[»] chr3 (12 HSPs)
chr3 (1-286)||(22435617-22435902)
chr3 (1-282)||(22366910-22367191)
chr3 (1-248)||(22466934-22467181)
chr3 (1-250)||(22356976-22357234)
chr3 (1-248)||(22629429-22629676)
chr3 (1-252)||(22441731-22441976)
chr3 (83-250)||(22430235-22430402)
chr3 (1-247)||(22352797-22353044)
chr3 (5-96)||(37929746-37929837)
chr3 (115-250)||(37929959-37930094)
chr3 (1-99)||(22634444-22634542)
chr3 (111-170)||(22634602-22634661)
[»] chr4 (1 HSPs)
chr4 (1-170)||(29604417-29604580)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 22435617 - 22435902
Alignment:
Q  1 tcatgcctccaataccatccttcagttgaatcaaagacagacaatcgactaaaaaatgacgtagctttctaagcttgcaaatctccttcggcatattacg 100  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  22435617 tcatgcctccaataccatccttcaaatgaatcaaagacagagaatcgcctaaaaaatgacgtagctttctaagcttgcaaacctcctttggcatattacg 22435716  T
Q  101 attctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagttcagaatatttttctccaatcaccctgaac 200  Q
    ||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22435717 attttcaaactctgtagatcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaagttcagaatatttttctccaatcaccctgaac 22435816  T
Q  201 ccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttcaagttgttttgagctcaaagcaagtaccttcaaccgcct 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22435817 ccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttcaagttgttttgagcttaaagcaagtaccttcaaccgcct 22435902  T

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Target: chr3; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 22366910 - 22367191
Alignment:
Q  1 tcatgcctccaataccatccttcagttgaatcaaagacagacaatcgactaaaaaatgacgtagctttctaagcttgcaaatctccttcggcatattacg 100  Q
    ||||||||||||||||||||||||  | ||||||||||| || || | |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22366910 tcatgcctccaataccatccttcaactcaatcaaagacatacgatagcctaaaaaatggcgtagctttctaagcttgcaaatctccttcggcatattacg 22367009  T
Q  101 attctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagttcagaatatttttctccaatcaccctgaac 200  Q
    ||| | ||||| |||   ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||||| || ||||||||    
T  22367010 atttttaaactctgtttctcttaaatccaaagtctctaggttcacaagcatgccaatggattttggaagttcagaatttctttctccattccccctgaac 22367109  T
Q  201 ccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttcaagttgttttgagctcaaagcaagtaccttcaacc 282  Q
    | |||| |||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |||| ||| ||||||||||    
T  22367110 caaaaatatttcaagtggttcaaacttcctaaatcatgaggaatttcatgttggtttgagcttaaagtaagcaccttcaacc 22367191  T

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Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 22466934 - 22467181
Alignment:
Q  1 tcatgcctccaataccatccttcagttgaatcaaagacagacaatcgactaaaaaatgacgtagctttctaagcttgcaaatctccttcggcatattacg 100  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||| |||    
T  22466934 tcatgcctccaataccatccttcaactgaatcaaagacatacaatcgcctaataaatggcgtagctttctaagcttgcaaatctcctttggcatatcacg 22467033  T
Q  101 attctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagttcagaatatttttctccaatcaccctgaac 200  Q
    | | ||| | ||  || |||||||||| |||||||||| |||  ||| ||||||||||||||| |||||| |||||||| || ||||||||| || ||||    
T  22467034 aatttcataattgctatatcttaaatccaaagtctctaagtttgcgatcatgccaatggattttggaagtccagaatatcttcctccaatcatcccgaac 22467133  T
Q  201 ccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttca 248  Q
     ||| | |||||||||||||||||||||||||||||| ||||||||||    
T  22467134 tcaagatatttcaagtggttcaaacttcccaaatcattaggaatttca 22467181  T

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Target: chr3; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 22356976 - 22357234
Alignment:
Q  1 tcatgcctccaataccatccttcagttgaatcaaagacagacaatcgactaaaaaatgacgtagctttctaagcttgcaaatctccttcggcatattacg 100  Q
    ||||||||||||||||||||||||  ||||||||||||| | | | | |||| ||||| ||||||||||||||||||||||||||||||||||||||| |    
T  22356976 tcatgcctccaataccatccttcaactgaatcaaagacataaagttgcctaataaatggcgtagctttctaagcttgcaaatctccttcggcatattagg 22357075  T
Q  101 attctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagtt---------cagaatatttttctccaatc 191  Q
    ||  ||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||          || |||| |||||||||||    
T  22357076 atgttcaaattttggagatcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaatttttggaaatataggatatgtttctccaatc 22357175  T
Q  192 accctgaacccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttcaag 250  Q
    ||   |||||||||| |||||||||||||||||||||||||||| | ||||| ||||||    
T  22357176 acaaagaacccaaaatatttcaagtggttcaaacttcccaaatccttaggaacttcaag 22357234  T

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Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 22629429 - 22629676
Alignment:
Q  1 tcatgcctccaataccatccttcagttgaatcaaagacagacaatcgactaaaaaatgacgtagctttctaagcttgcaaatctccttcggcatattacg 100  Q
    ||||||||||||||| ||||||||  | ||||||||||| || |  | |||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  22629429 tcatgcctccaatactatccttcaactcaatcaaagacatacgaatgcctaaaaaatggcgtagctttctaagcatgcaaatctcctttggcatattacg 22629528  T
Q  101 attctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagttcagaatatttttctccaatcaccctgaac 200  Q
    ||| |||  | || ||  ||||||||| ||||||||||||||||||||||||||||||||||| |||| | || ||| | || ||||||||| |  ||||    
T  22629529 attttcagtcattctatgtcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaattccaaaatctcttcctccaatcatcaggaac 22629628  T
Q  201 ccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttca 248  Q
     ||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  22629629 tcaaaatatttcaagtggttcaaacttccctaatcattaggaatttca 22629676  T

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Target: chr3; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 22441731 - 22441976
Alignment:
Q  1 tcatgcctccaataccatccttcagttgaatcaaagacagacaatcgactaaaaaatgacgtagctttctaagcttgcaaatctccttcggcatattacg 100  Q
    ||||||||||||||||||||||||  | ||||||||||| || || | |||||||||| |||||||||||||||||||||||||||||||||||||||      
T  22441731 tcatgcctccaataccatccttcaactcaatcaaagacatacgatagcctaaaaaatggcgtagctttctaagcttgcaaatctccttcggcatattatc 22441830  T
Q  101 attctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagttcagaatatttttctccaatcaccctgaac 200  Q
    |||  |||| | ||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || ||||  ||      ||  | | |    
T  22441831 atttacaaaatatgtatctcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaagttcaaaacatttacct------acatttatc 22441924  T
Q  201 ccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttcaagtt 252  Q
    |||||| |||||||||| ||||||||||||||||||  ||||||||||||||    
T  22441925 ccaaaatatttcaagtgcttcaaacttcccaaatcaataggaatttcaagtt 22441976  T

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Target: chr3; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 83 - 250
Target Start/End: Original strand, 22430235 - 22430402
Alignment:
Q  83 ctccttcggcatattacgattctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagttcagaatatttt 182  Q
    ||||| |||||||||| |||| |||||| || || |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |     
T  22430235 ctcctgcggcatattatgattttcaaaccttatatatcttaaatccaaagtctctaggttcactagcatgccaatggattttggaagtttagaatatcta 22430334  T
Q  183 tctccaatcaccctgaacccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttcaag 250  Q
      |||| |||||  |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  22430335 cttccattcacctagaacccaaaatatttcaagtggtttaaacttcccaaatcattaggaatttcaag 22430402  T

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Target: chr3; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 22352797 - 22353044
Alignment:
Q  1 tcatgcctccaataccatccttcagttgaatcaaagacagacaatcgactaaaaaatgacgtagctttctaagcttgcaaatctccttcggcatattacg 100  Q
    ||||||||||||||||||| |||| ||||||||||||||     | | |||||||||| |||| ||||||||||||||||||||||||   |||||||||    
T  22352797 tcatgcctccaataccatctttcaattgaatcaaagacatttggttgcctaaaaaatggcgtaactttctaagcttgcaaatctcctttaacatattacg 22352896  T
Q  101 attctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagttca---gaatatttttctccaatcaccctg 197  Q
         | |||  || |  ||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||   |||||| || ||||||||| || |    
T  22352897 caatgcgaacagtgcaactcttaaatccaaagtctctaggttcacgagcatgccaatggattttggaagtccagttgaatatcttcctccaatcatccag 22352996  T
Q  198 aacccaaaaaatttcaagtggttcaaacttcccaaatcatgaggaatttc 247  Q
    ||| |  || ||||||| ||||||||| |||||||||||| |||||||||    
T  22352997 aactc--aatatttcaaatggttcaaatttcccaaatcattaggaatttc 22353044  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 37929746 - 37929837
Alignment:
Q  5 gcctccaataccatccttcagttgaatcaaagacagacaatcgactaaaaaatgacgtagctttctaagcttgcaaatctccttcggcatat 96  Q
    ||||||||||||||||||||  |||||||||||||    |  | ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  37929746 gcctccaataccatccttcaactgaatcaaagacatttcagagcctaaaaaacaacgtagctttctaagcttgcaaatctccttcggcatat 37929837  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 250
Target Start/End: Original strand, 37929959 - 37930094
Alignment:
Q  115 tagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagttcagaatatttttctccaatcaccctgaacccaaaaaatttcaa 214  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||  | || ||  | |||||  |||| || || |||||||    
T  37929959 tagattttaaatccaaagtctctaggttcacgagcatgccaatggattttggaagtccagaacttcttactttattcaccacgaacgcataatatttcaa 37930058  T
Q  215 gtggttcaaacttcccaaatcatgaggaatttcaag 250  Q
     || ||||||||||| ||||| | | ||||||||||    
T  37930059 ttgtttcaaacttccaaaatctttaagaatttcaag 37930094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 22634444 - 22634542
Alignment:
Q  1 tcatgcctccaataccatccttcagttgaatcaaagacagacaatcgactaaaaaatgacgtagctttctaagcttgcaaatctccttcggcatattac 99  Q
    ||||||||||||||||||||||||  ||||||| |||||    || | ||| |||||| ||||||||| ||||||||||||||||||| ||||||||||    
T  22634444 tcatgcctccaataccatccttcaactgaatcagagacatttgatagcctataaaatggcgtagctttttaagcttgcaaatctccttgggcatattac 22634542  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 22634602 - 22634661
Alignment:
Q  111 tttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagt 170  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  22634602 tttggagattttaaatccaaagtctctaggttcacgagcatgccaatggattttggaagt 22634661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 29604417 - 29604580
Alignment:
Q  1 tcatgcctccaataccatccttcagttgaatcaaagacagacaatcgactaaaaaatgacgtagctttctaagcttgcaaatctccttcggcatattacg 100  Q
    |||||||||||| ||||||||||| ||||||| |||||| ||    | ||| |||||| || |||||||||||||||||||||||||||||||||  |      
T  29604417 tcatgcctccaagaccatccttcaattgaatccaagacatactcaagcctagaaaatggcgcagctttctaagcttgcaaatctccttcggcatagca-- 29604514  T
Q  101 attctcaaactttgtagatcttaaatctaaagtctctaggttcacgagcatgccaatggatttcggaagt 170  Q
        |  ||| ||||| || ||||||| || |||||||||||| ||||||||| |||||||||| |||||    
T  29604515 ----tagaacattgtatatgttaaatccaaggtctctaggttctcgagcatgcaaatggatttcagaagt 29604580  T

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