View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10053_low_10 (Length: 384)
Name: NF10053_low_10
Description: NF10053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10053_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 7953671 - 7954029
Alignment:
| Q |
19 |
atattgttatctgtgctgctggtagactactaattgaagatcaggtcaagattattaaagcaattaaagaagctggaaacgttaaggtgacaaaatttgt |
118 |
Q |
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| T |
7953671 |
atattgtgatttgtgctgctggtagactactaattgaggatcaggtcaagattattaaagcaattaaagaagctggaaacgttaaggtgagcaaatttgt |
7953770 |
T |
|
| Q |
119 |
cactgtgctcg--tacataagttcaaataagtcaattcagatagactctta-gtaatacatcctttgatggttagatttgtgctcgttatattgaatatt |
215 |
Q |
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| T |
7953771 |
cactacaccacactaaataagttcaaataagtcaatctaaataaactattaagtaatagctcctttgctggttagatttcggcttgttatattgaatgtt |
7953870 |
T |
|
| Q |
216 |
ggtattaaatttcttgtgtctacagaaatttttcccatccgaatttgggctagacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaa |
315 |
Q |
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| T |
7953871 |
ggtactaaatttcttgtgtctacagaaatttttcccatccgaatttgggctagacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaa |
7953970 |
T |
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| Q |
316 |
gaaaaagcgagtatccgaagagtaattgaagctaaaggagttccttacacttacctttg |
374 |
Q |
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| T |
7953971 |
gaaaaagcgagtatccgaagagtaattgaagctgaaggagttccttacacttacctttg |
7954029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 7966551 - 7966909
Alignment:
| Q |
19 |
atattgttatctgtgctgctggtagactactaattgaagatcaggtcaagattattaaagcaattaaagaagctggaaacgttaaggtgacaaaatttgt |
118 |
Q |
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||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7966551 |
atattgtgatttgtgctgctggtagactactaattgaggatcaggtcaagattattaaagcaattaaagaagctggaaacgttaaggtgagcaaatttgt |
7966650 |
T |
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| Q |
119 |
cactgtgctcg--tacataagttcaaataagtcaattcagatagactctta-gtaatacatcctttgatggttagatttgtgctcgttatattgaatatt |
215 |
Q |
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|||| | || |||||||||||||||||||| | ||| ||| ||| |||||| ||||||| ||||||||||| ||| |||||||||||| || |
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| T |
7966651 |
cactacaccacactaaataagttcaaataagtcaatctaaataaactattaagtaatagctcctttgctggttagatttcggcttgttatattgaatgtt |
7966750 |
T |
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| Q |
216 |
ggtattaaatttcttgtgtctacagaaatttttcccatccgaatttgggctagacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaa |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966751 |
ggtactaaatttcttgtgtctacagaaatttttcccatccgaatttgggctagacgtggaccgtcacgaggcagttgagccagttagacaagtttttgaa |
7966850 |
T |
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| Q |
316 |
gaaaaagcgagtatccgaagagtaattgaagctaaaggagttccttacacttacctttg |
374 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7966851 |
gaaaaagcgagtatccgaagagtaattgaagctgaaggagttccttacacttacctttg |
7966909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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