View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10053_low_12 (Length: 368)
Name: NF10053_low_12
Description: NF10053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10053_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 20691618 - 20691953
Alignment:
| Q |
16 |
gcagagacgaagatggaacagttgaaaccgaactcgaaccagcggcaaccggtgctacgacagatggatgataaataaccggcgatgatgttgatgaaga |
115 |
Q |
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| T |
20691618 |
gcagagacgaagatggaacagttgaaaccgaactcgaaccagcggcaaccggtgctacgacagatggatgataaataaccggcgatgatgttgatgaaga |
20691717 |
T |
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| Q |
116 |
agcggtgactgtaaccggagttagagtggaagatggaacggtgtgtccggcgtgtgaaccacgaccagcaccacggcctgatagtaaagcattgatggat |
215 |
Q |
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| T |
20691718 |
agcggtgactgtaaccggagtttgagtggaagatggaacggtgtgtccggcgtgtgaaccacgaccagcaccacggcctgatagtaaagcattgatggat |
20691817 |
T |
|
| Q |
216 |
gattgttgtgaaatcggcggagaaggttggttacggtgagaatcgggatggtttgcaccacggccacggcctgatcctggagcattgagggaagattgtt |
315 |
Q |
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| T |
20691818 |
gattgttgtgaaatcggcggagaaggttggttacggtgagaatcgggatggtttgcaccacggccacggcctgatcctggagcattgacggaagattgtt |
20691917 |
T |
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| Q |
316 |
gagaagtcgccggagaaagttggttacggcgaggat |
351 |
Q |
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| T |
20691918 |
gagaagtcgccggagaaagttggttacggcgaggat |
20691953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 268
Target Start/End: Original strand, 20667090 - 20667206
Alignment:
| Q |
146 |
agatggaacggtgtgtccggcgtgtgaaccacgaccagcaccacggcctgatagtaaagcattgatggatgattgttgtgaaatcggcggagaaggttgg |
245 |
Q |
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| T |
20667090 |
agatggaacggtgtgtccaccgcgtgaaccacgac---caccacgtcctgatcctgcagcattgacggatga---ctgtgaaattgccggagaaggttga |
20667183 |
T |
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| Q |
246 |
ttacggtgagaatcgggatggtt |
268 |
Q |
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| T |
20667184 |
ttccggcgaggatcgggatggtt |
20667206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 44507795 - 44507662
Alignment:
| Q |
30 |
ggaacagttgaaaccgaactcgaaccagcggcaaccggtgctacgacagatggatgataaataaccggcgatgatgttgatgaagaagcggtgactgtaa |
129 |
Q |
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| T |
44507795 |
ggaacggttgaaaccgaactcgaaccagcaacaaccggtgctacgacggatggatgataactagcctgcgctgatgttgacgaagaagcggtgactgcaa |
44507696 |
T |
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| Q |
130 |
ccggagttagagtggaagatggaacggtgtgtcc |
163 |
Q |
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| T |
44507695 |
ccggagttggagtggaagatggaacggtgtgtcc |
44507662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 44507656 - 44507525
Alignment:
| Q |
223 |
gtgaaatcggcggagaaggttggttacggtgagaatcgggatggtttgcaccacggccacggcctgatcctggagcatt---gagggaagattgttgaga |
319 |
Q |
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|||||||| ||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||| |
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| T |
44507656 |
gtgaaatctgcggagagggttcgctacggcaagaatcgggatggtttgcaccacggccacggcctgatggtggagcattgacgacggacgattgttgaga |
44507557 |
T |
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| Q |
320 |
agtcgccggagaaagttggttacggcgaggat |
351 |
Q |
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| || |||| ||||||||||||||||||||| |
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| T |
44507556 |
aaacgtcggaaaaagttggttacggcgaggat |
44507525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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