View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10053_low_14 (Length: 266)
Name: NF10053_low_14
Description: NF10053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10053_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 11751567 - 11751404
Alignment:
| Q |
19 |
gctcttgcagaaatagggaaagagaaaaggttatctaatgtgaaggcatgggaagacagtgaaaaaaccaaagcagagaataagtaagaattgattttat |
118 |
Q |
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| T |
11751567 |
gctcttgcagaaatagggaaagagaaaaggttatctaatgtgaaggcatgggaagacagtgaaaaaaccaaagcagagaataagtaagaatttatttgat |
11751468 |
T |
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| Q |
119 |
tgtttgttttggagttagttattatagccataaaacttagcttaattgcataaagaaacctcat |
182 |
Q |
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| T |
11751467 |
tgtttgttttgcagttagttattatagccataaaacttagcttaattgcataaaggaccctcat |
11751404 |
T |
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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 46537800 - 46537867
Alignment:
| Q |
48 |
gttatctaatgtgaaggcatgggaagacagtgaaaaaaccaaagcagagaataagtaagaattgattt |
115 |
Q |
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| T |
46537800 |
gttatctaatgtgaaggcatgggaagtaagtgaaaaatccaaagcagaaaataagtaaaaatttattt |
46537867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 38211085 - 38211011
Alignment:
| Q |
27 |
agaaatagggaaagagaaaaggttatctaatgtgaaggcatgggaagacagtgaaaaaaccaaagcagagaataa |
101 |
Q |
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| T |
38211085 |
agaaatagagacagagaaaaggttatttgatgtgaaggcatgggaaaaaaatgaaaagtcctaagtagagaataa |
38211011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 28942483 - 28942550
Alignment:
| Q |
37 |
aaagagaaaaggttatctaatgtgaaggcatgggaagacagtgaaaaaaccaaagcagagaataagta |
104 |
Q |
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| T |
28942483 |
aaagagaaaaagctatgttatgtgaaagcatgggaagaaagtgaaaaaaccaaagcagataacaagta |
28942550 |
T |
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