View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10053_low_16 (Length: 261)
Name: NF10053_low_16
Description: NF10053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10053_low_16 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 38868267 - 38868509
Alignment:
| Q |
19 |
cacagaaattaacctggcctcaaatctagtggctttgaatccttcaatatgtcaaagttatcttctagtcttatatagactttcctctcaaagacattcc |
118 |
Q |
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| T |
38868267 |
cacagaaattaacctggtctcaaatctagtggctttgaatccttcaatatgtcaaagttatcttctagtcttatatagactttcctctcaaagacattcc |
38868366 |
T |
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| Q |
119 |
tacagtcttccaaagtacttttgattatggtaaaagcatataactgttctaatttgtgaacatcttcctcgaaactgatcatggtatagtcctcttcaac |
218 |
Q |
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| T |
38868367 |
tatagtcttccaaagtacttttgattatggtaaaagcatataactgttctaatttgtgaacatcttcctcgaaactgatcatggtatagtcctcttcaac |
38868466 |
T |
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| Q |
219 |
tgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
261 |
Q |
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| T |
38868467 |
tgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
38868509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 38806821 - 38806751
Alignment:
| Q |
190 |
aaactgatcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
261 |
Q |
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| T |
38806821 |
aaactgatcatggta-agtcctcttcgattgtacaccgagacaaatccagaaacctcaatttgtttagcttt |
38806751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 38849438 - 38849502
Alignment:
| Q |
197 |
tcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
261 |
Q |
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| T |
38849438 |
tcatggtattgtcctcttcaactatacactaagacaaatccaacaacctgaatttgtttagcttt |
38849502 |
T |
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