View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10053_low_18 (Length: 246)
Name: NF10053_low_18
Description: NF10053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10053_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 22437056 - 22437290
Alignment:
| Q |
1 |
actgtacgctctactcttcccctcaccagccaattaaacaatatgcgtttgggctcttcaaagcccacgacatcagcttcattcataaaaattggagcct |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
22437056 |
actgcacgctctactcttcccctcaccagccaattaaacaatatgcgtttgggctcttcaaagcccacgacatcagcttcattcatatgaaatggagcct |
22437155 |
T |
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| Q |
101 |
gtcgaaggttctgaaataatgaattgtctatgtttggttcagaactacttgatgctttatccgaagaagattggagacggaaggcttga---ttttcact |
197 |
Q |
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| T |
22437156 |
gtcgaaggttctgaaataatgaattgtttatgtttggtgcagaactacttgatgctttatccgaagaagattggagacggaaggcttgatctttttcact |
22437255 |
T |
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| Q |
198 |
tgtatcttttatttcactcattcgggatttgatgt |
232 |
Q |
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| T |
22437256 |
tgtatcttttatttcactcattcgggatttgatgt |
22437290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 22431597 - 22431807
Alignment:
| Q |
25 |
accagccaattaaacaatatgcgtttgggctcttcaaagcccacgacatcagcttcattcataaaaattggagcctgtcgaaggttctgaaataatgaat |
124 |
Q |
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| T |
22431597 |
accagccaatcaatcaatatgtctcttggctcttcaaatcccacaacatcagcttcatccatataaaatggagcgtcccgaagattcttcaataatgagg |
22431696 |
T |
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| Q |
125 |
tgtctatgtttggttcagaactacttgatgctttatccgaagaagattggagacggaaggcttgat---tttcacttgtatcttttatttcactcattcg |
221 |
Q |
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| T |
22431697 |
cgtttctgtttgttgcagaactagttgatgctttatccgaagaagattggatatggaagccatgatctttttcacttgtatcttttatttcactaattcg |
22431796 |
T |
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| Q |
222 |
ggatttgatgt |
232 |
Q |
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||||||||||| |
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| T |
22431797 |
ggatttgatgt |
22431807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 22632338 - 22632521
Alignment:
| Q |
52 |
ggctcttcaaagcccacgacatcagcttcattcataaaaattggagcctgtcgaaggttctgaaataatgaattgtctatgtttggttcagaactacttg |
151 |
Q |
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||||||||||| ||||| ||||||||||||| |||| ||| |||||| | |||||||||||| |||||||| | | |||||| | |||||||||||| |
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| T |
22632338 |
ggctcttcaaatcccacaacatcagcttcatccatataaaatggagcgtctcgaaggttctgcaataatgaggcatttctgtttgttgcagaactacttg |
22632437 |
T |
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| Q |
152 |
atgctttatccgaagaagattggagacggaaggcttga---ttttcacttgtatcttttatttcactcattcgggatttgatgt |
232 |
Q |
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| T |
22632438 |
atggtttatccgaagaagattggatgtggaagccatgatctttttcacttgtttcttttatttctctaattctggatttgatgt |
22632521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 22630912 - 22631029
Alignment:
| Q |
52 |
ggctcttcaaagcccacgacatcagcttcattcataaaaattggagcctgtcgaaggttctgaaataatgaattgtctatgtttggttcagaactacttg |
151 |
Q |
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| T |
22630912 |
ggctcgtcaaagcccacaacatcagcttcatccaaatacaatggagcatctcgaaggttctggaataatgaggtgtttctgtttgttgcagaactacttg |
22631011 |
T |
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| Q |
152 |
atgctttatccgaagaag |
169 |
Q |
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||| |||||||||||||| |
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| T |
22631012 |
atggtttatccgaagaag |
22631029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 22358493 - 22358661
Alignment:
| Q |
70 |
acatcagcttcattcataaaaattggagcctgtcgaaggttctgaaataatgaattgtctatgtttggttcagaactacttgatgctttatccgaagaag |
169 |
Q |
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|||||||||||| ||| ||| |||||| | ||||||||||||||||||||| || | |||||| | || ||||| ||||||||||||||||||||| |
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| T |
22358493 |
acatcagcttcaaccatgtaaagtggagcgtctcgaaggttctgaaataatgaggcgtttctgtttgttgcataactagttgatgctttatccgaagaag |
22358592 |
T |
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| Q |
170 |
attggagacggaaggcttga---ttttca---cttgtatcttttatttcactcattcgggatttgatgt |
232 |
Q |
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|||||| | |||| | ||| |||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
22358593 |
attggatatagaagccatgatctttttcagttcttgtatcatttatttcacttattcgggatttgatgt |
22358661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 22468421 - 22468604
Alignment:
| Q |
52 |
ggctcttcaaagcccacgacatcagcttcattcataaaaattggagcctgtcgaaggttctgaaataatgaattgtctatgtttggttcagaactacttg |
151 |
Q |
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||||||||||| ||||| | ||||||||||| |||| ||| |||||| | |||||||||||| || ||||| || | |||||| | ||||||| |||| |
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| T |
22468421 |
ggctcttcaaatcccacaagatcagcttcatccatataaaatggagcgtctcgaaggttctgcaaaaatgaggcgtttctgtttgttgcagaactgcttg |
22468520 |
T |
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| Q |
152 |
atgctttatccgaagaagattggagacggaaggcttga---ttttcacttgtatcttttatttcactcattcgggatttgatgt |
232 |
Q |
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||| |||||| ||||||||||||| |||| | ||| ||| ||||||| ||||||||||| || |||||||| ||||||| |
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| T |
22468521 |
atggtttatctgaagaagattggatgttgaagccatgatcttttgcacttgtttcttttatttctctgattcgggacttgatgt |
22468604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 22635994 - 22636162
Alignment:
| Q |
70 |
acatcagcttcattcataaaaattggagcctgtcgaaggttctgaaataatgaattgtctatgtttggttcagaactacttgatgctttatccgaagaag |
169 |
Q |
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|||||||||||| ||| ||| |||||| | ||||||||||||||||| ||| || | |||||| | |||||||| |||||||||||||||| |||| |
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| T |
22635994 |
acatcagcttcaaccatgtaaagtggagcgtctcgaaggttctgaaatagtgaggcgtttctgtttgttgcagaactagttgatgctttatccgatgaag |
22636093 |
T |
|
| Q |
170 |
attggagacggaaggcttga---ttttca---cttgtatcttttatttcactcattcgggatttgatgt |
232 |
Q |
| |
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| T |
22636094 |
attggatatagaagccatgatctttttcagttcttgtatcatttatttcacttattcgggatttgatgt |
22636162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 232
Target Start/End: Original strand, 22368404 - 22368568
Alignment:
| Q |
71 |
catcagcttcattcataaaaattggagcctgtcgaaggttctgaaataatgaattgtctatgtttggttcagaactacttgatgctttatccgaagaaga |
170 |
Q |
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||||||| |||| ||| ||| |||||| | ||||||||||||||||||||| | | |||||| | ||||||||||||||||||||||| ||||||| |
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| T |
22368404 |
catcagcatcatccatgtaaagtggagcatctcgaaggttctgaaataatgaggcatttctgtttgttgcagaactacttgatgctttatccaaagaaga |
22368503 |
T |
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| Q |
171 |
ttggagacggaaggcttga---ttttcacttgtatcttttatttcactcattcgggatttgatgt |
232 |
Q |
| |
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||||| |||| | ||| ||||||||||| ||||||||||| || ||| |||| ||||||| |
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| T |
22368504 |
ttggatgtcgaagtcatgatccttttcacttgtttcttttatttccctaatttgggaattgatgt |
22368568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 22631030 - 22631125
Alignment:
| Q |
140 |
cagaactacttgatgctttatccgaagaagattggagacggaaggcttga---ttttcacttgtatcttttatttcactcattcgggatttgatgt |
232 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| ||||| | ||| ||||||||||| ||||||||||| || ||| |||||||||||| |
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| T |
22631030 |
cagaactacttgatggtttatccgaagaagattggatgtggaagccatgatctttttcacttgtttcttttatttctctaatttgggatttgatgt |
22631125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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