View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10053_low_3 (Length: 556)

Name: NF10053_low_3
Description: NF10053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10053_low_3
NF10053_low_3
[»] chr6 (1 HSPs)
chr6 (9-556)||(12122378-12122923)
[»] chr3 (1 HSPs)
chr3 (285-314)||(54618727-54618756)


Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 9 - 556
Target Start/End: Original strand, 12122378 - 12122923
Alignment:
Q  9 agcagagaatccgggtccgtctaatgtaatagtatgcactttgtatatctaaccaaacaaaaatcttacaagtttcaaattacaataaatttgagtatca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  12122378 agcagagaatccgggtccgtctaatgtaatagtatgcactttgtatatctaaccaaacaaaaatcttacaagtttcaaattacaatacatttgagcatca 12122477  T
Q  109 ataggaccatatacgtaacagaattcacggaagttgtcaccaatttctctttactttcatgtacaagtacatctctaagtttaagctaaaccacacaata 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12122478 ataggaccagatacgtaacagaattcacggaagttgtcaccaatttctctttactttcatgtacaagtacatctctaagtttaagctaaaccacacaata 12122577  T
Q  209 catcttagtacaaacaagtatgaatcaactttttggttggtaaactaggtatctctgacgtacaaatgtaaatgccaattcttcgagataattgagatcc 308  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12122578 catctcagtacaaacaagtatgaatcaactttttggttggtaaactaggtatctttgacgtacaaatgtaaatgccaattcttcgagataattgagatcc 12122677  T
Q  309 atttaaagaactgactactcccaacgcatgtttttccatgcggatcgaccaaagatcgaactttgaaccaaatggtgaaacgattcaagcctctaccatt 408  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12122678 atttaaagaactgactacttccaacacatgtttttccatgcgtatcgaccaaagatcgaactttgaatcaaatggtgaaacgattcaagcctctaccatt 12122777  T
Q  409 tgtttcacacaatgttggtaatataaatcacttaaaacacgcgtatttcgttcgattaatcatggtggtgagaaataaactaaatctattgggtgagtat 508  Q
    ||| |||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12122778 tgtgtcacacaatgttggcaatataaatcacttaaa--acgcgtatttcgttcgattaatcatggtggtgaaaaataaactaaatctattgggtgagtat 12122875  T
Q  509 ttgcctcttacctaatactctaacttctcgaattagccctacaactac 556  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  12122876 ttgcctcttacctaatactcgaacttctcgaattagccctacaactac 12122923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 314
Target Start/End: Complemental strand, 54618756 - 54618727
Alignment:
Q  285 aattcttcgagataattgagatccatttaa 314  Q
    ||||||||||||||||||||||||||||||    
T  54618756 aattcttcgagataattgagatccatttaa 54618727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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