View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10054_high_3 (Length: 251)

Name: NF10054_high_3
Description: NF10054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10054_high_3
NF10054_high_3
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-248)||(15806-16053)
[»] chr1 (9 HSPs)
chr1 (1-248)||(2701128-2701375)
chr1 (22-233)||(52681932-52682143)
chr1 (1-182)||(15822340-15822515)
chr1 (1-227)||(52976155-52976381)
chr1 (166-248)||(6854850-6854932)
chr1 (6-74)||(9717525-9717593)
chr1 (39-101)||(47804904-47804966)
chr1 (6-74)||(27514090-27514158)
chr1 (39-71)||(49323710-49323742)
[»] chr2 (3 HSPs)
chr2 (1-248)||(24759720-24759967)
chr2 (19-235)||(29493098-29493314)
chr2 (39-101)||(21264332-21264394)
[»] chr3 (6 HSPs)
chr3 (1-248)||(22810906-22811152)
chr3 (22-233)||(33720305-33720516)
chr3 (1-86)||(11013425-11013510)
chr3 (39-101)||(6847475-6847537)
chr3 (172-221)||(42731965-42732014)
chr3 (37-86)||(50061064-50061113)
[»] chr4 (4 HSPs)
chr4 (10-248)||(25244919-25245146)
chr4 (166-235)||(1970529-1970598)
chr4 (6-74)||(56389847-56389915)
chr4 (49-101)||(21064474-21064526)
[»] chr8 (4 HSPs)
chr8 (22-233)||(36074105-36074316)
chr8 (169-221)||(22615213-22615265)
chr8 (6-74)||(39745544-39745612)
chr8 (39-71)||(43765172-43765204)
[»] chr7 (2 HSPs)
chr7 (22-227)||(18933612-18933817)
chr7 (52-248)||(48428923-48429119)
[»] chr6 (1 HSPs)
chr6 (40-78)||(12171836-12171874)


Alignment Details
Target: scaffold0013 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 16053 - 15806
Alignment:
Q  1 tctatcttttctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcac 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16053 tctatcttttctttgatgaaattacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcac 15954  T
Q  101 agtacaatttcaatgggagttctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15953 agtacaatttcaatgggagttctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattc 15854  T
Q  201 agcttcagcactacttcttgcaactactccttgttctctgcttctcca 248  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  15853 agcttcagcactacttcttgcaactactccttgttttttgcttctcca 15806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 2701128 - 2701375
Alignment:
Q  1 tctatcttttctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcac 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2701128 tctatcttttctttgatgaaataacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcac 2701227  T
Q  101 agtacaatttcaatgggagttctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2701228 agtacaatttcaatgggagttctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattc 2701327  T
Q  201 agcttcagcactacttcttgcaactactccttgttctctgcttctcca 248  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  2701328 agcttcagcactacttcttgcaactactccttgttttttgcttctcca 2701375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 52681932 - 52682143
Alignment:
Q  22 tgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcacagtacaatttcaatgggagtt 121  Q
    ||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||| || ||||||||||| ||||    
T  52681932 tgacgatcgatttcaatatgctttgttcgatcatgttgaactggattatgagctatacttattgcggccttgttgtcacaatataatttcaatggaagtt 52682031  T
Q  122 ctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattcagcttcagcactacttcttgc 221  Q
    ||||    ||||| || || ||||| ||||   ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||    
T  52682032 ctactgtcatctttagctcctttagaactcgatgaatccaaagaccctcacaaattccttgggccattgctctaaactcagcctctgcactgcttctagc 52682131  T
Q  222 aactactccttg 233  Q
    |||||| |||||    
T  52682132 aactacaccttg 52682143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 15822515 - 15822340
Alignment:
Q  1 tctatcttttctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcac 100  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||||| ||||||||||||| ||| ||||||||||       
T  15822515 tctatcttttctttgatgaaatgacgatcgatctcaatatattttgtacgatcatgttgtacaggattgtgagctatgctta-agcagccttgttgt--- 15822420  T
Q  101 agtacaatttcaatgggagttctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttg 182  Q
      ||||||||||||| |||||||||| ||||||  ||||| || |  ||| | ||||||||||||||| |||||||||||||    
T  15822419 --tacaatttcaatgagagttctaccactatctctagttccttcaagactttaagaatccacatacctacacaaattccttg 15822340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 52976155 - 52976381
Alignment:
Q  1 tctatcttttctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcac 100  Q
    ||||| || ||||| || || ||||||||||| || ||||||||||| |||||||||| |||| ||||||  |||||  |||| || ||| |||||||||    
T  52976155 tctattttctcttttataaagtgacgatcgatttcaatatgttttgttcgatcatgttaaactagattataggctatatttattgcggccctgttgtcac 52976254  T
Q  101 agtacaatttcaatgggagttctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattc 200  Q
    | || | ||| ||||| |||||||||  |||||| ||||| ||||| ||||   | ||||| | ||| || |||||||||||||||||||||||||| ||    
T  52976255 aatatagttttaatggaagttctaccgttatctttagttcctttagaactcgatggatccaaagaccctcgcaaattccttgggccattgctctaaactc 52976354  T
Q  201 agcttcagcactacttcttgcaactac 227  Q
    ||| |  ||||| ||||||||||||||    
T  52976355 agcctatgcactgcttcttgcaactac 52976381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 6854850 - 6854932
Alignment:
Q  166 ccttcacaaattccttgggccattgctctaaattcagcttcagcactacttcttgcaactactccttgttctctgcttctcca 248  Q
    ||||||||||| ||||| ||||| ||||| || |||||||| |||||||||||||| || ||||||||||   ||||||||||    
T  6854850 ccttcacaaataccttgagccatagctctgaactcagcttctgcactacttcttgctacaactccttgtttcttgcttctcca 6854932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 9717525 - 9717593
Alignment:
Q  6 cttttctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagc 74  Q
    |||||||||||||||||| | ||| ||||| | ||||||||| | ||||||||| || |||||||||||    
T  9717525 cttttctttgatgaaatgtctatcaatctctacatgttttgttctatcatgttggacaggattatgagc 9717593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 47804966 - 47804904
Alignment:
Q  39 atgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcaca 101  Q
    |||||| || |||||||||||||| ||||| ||||  ||| ||||||| ||||||||||||||    
T  47804966 atgtttggttcgatcatgttgaaccggattgtgagaaatgtttatagcagccttgttgtcaca 47804904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 27514090 - 27514158
Alignment:
Q  6 cttttctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagc 74  Q
    |||||||||||||||||| | ||| ||||| | ||||||||| | ||||||||| ||  ||||||||||    
T  27514090 cttttctttgatgaaatgtctatcaatctctacatgttttgttctatcatgttggacaagattatgagc 27514158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 49323742 - 49323710
Alignment:
Q  39 atgttttgtacgatcatgttgaactggattatg 71  Q
    ||||||||| |||||||||||||||||||||||    
T  49323742 atgttttgttcgatcatgttgaactggattatg 49323710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 24759720 - 24759967
Alignment:
Q  1 tctatcttttctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcac 100  Q
    |||||||| ||||| || |||||| |||||||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||  |||||||||||||    
T  24759720 tctatcttctctttaataaaatgatgatcgatctcaatatgttttgtacgatgatgttgaacaggattgtgagctatgcttatagtggccttgttgtcac 24759819  T
Q  101 agtacaatttcaatgggagttctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattc 200  Q
    | ||||||||||||| |||||||||| ||||||| | ||| || |  ||||||||||||||| |||||| |||||||||||| |||||||||||||| ||    
T  24759820 aatacaatttcaatgagagttctaccactatctttaattccttcaagactctgagaatccacgtacctttacaaattccttgagccattgctctaaactc 24759919  T
Q  201 agcttcagcactacttcttgcaactactccttgttctctgcttctcca 248  Q
    ||||||| ||||||||||||||| ||||||||| | | ||||||||||    
T  24759920 agcttcaacactacttcttgcaattactccttgatttttgcttctcca 24759967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 29493098 - 29493314
Alignment:
Q  19 aaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcacagtacaatttcaatggga 118  Q
    ||||| ||||| ||||| ||||| || || |  |||||||||||||| |||||||||||||| ||||| || ||  ||||| |||| ||||| ||||| |    
T  29493098 aaatgtcgatcaatctcaatatgcttggttctgtcatgttgaactgggttatgagctatgctaatagcggctttactgtcagagtataattttaatggaa 29493197  T
Q  119 gttctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattcagcttcagcactacttct 218  Q
    | || |  |  ||||| ||||||| ||| |||||  | ||||| |  ||||||||||| ||||| ||||| ||||| || |||||||| |||||||||||    
T  29493198 gctcaattttcatcttaagttcttctagaactctatggatccataatccttcacaaataccttgagccatagctctgaactcagcttctgcactacttct 29493297  T
Q  219 tgcaactactccttgtt 235  Q
    ||| || ||||||||||    
T  29493298 tgctacaactccttgtt 29493314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 21264394 - 21264332
Alignment:
Q  39 atgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcaca 101  Q
    |||||| || |||||||||||||| ||||| ||||  ||| ||||||| ||||||||||||||    
T  21264394 atgtttggttcgatcatgttgaaccggattgtgagaaatgtttatagcagccttgttgtcaca 21264332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 22810906 - 22811152
Alignment:
Q  1 tctatcttttctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcac 100  Q
    ||||| |||||||||||||||| || |||||||| ||||| |||| |||||| | |||||||  ||||||||||||||| |||||   ||||||||||||    
T  22810906 tctatattttctttgatgaaataac-atcgatctagatatattttctacgattacgttgaacaagattatgagctatgcgtatagagaccttgttgtcac 22811004  T
Q  101 agtacaatttcaatgggagttctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattc 200  Q
    || |||||||||||||||||||||||||||| |||||||| || |  |||||||||||||||||||||||||||| |||||| | ||||||| |||| ||    
T  22811005 agcacaatttcaatgggagttctacctctatattcagttccttcaagactctgagaatccacataccttcacaaagtccttgagtcattgctgtaaactc 22811104  T
Q  201 agcttcagcactacttcttgcaactactccttgttctctgcttctcca 248  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||    
T  22811105 agcttcagcactacttcttgcaaccactccttgttttttgcttctcca 22811152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 33720516 - 33720305
Alignment:
Q  22 tgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcacagtacaatttcaatgggagtt 121  Q
    ||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||| || ||||||||||| ||||    
T  33720516 tgacgatcgatttcaatatgctttgttcgatcatgttgaactggattatgagctatacttattgcggccttgttgtcacaatataatttcaatggaagtt 33720417  T
Q  122 ctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattcagcttcagcactacttcttgc 221  Q
    ||||    ||||| |  || ||||| ||||   ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||    
T  33720416 ctactgtcatctttatctcctttagaactcgatgaatccaaagaccctcacaaattccttgggccattgctctaaactcagcctctgcactgcttctagc 33720317  T
Q  222 aactactccttg 233  Q
    |||||| |||||    
T  33720316 aactacaccttg 33720305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 11013510 - 11013425
Alignment:
Q  1 tctatcttttctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagc 86  Q
    |||| ||| ||||| |||||||| ||| | || || |||||||| || | ||||||||||||||| |||||||||||||| |||||    
T  11013510 tctaacttctcttttatgaaatgtcgaccaatttcaatatgtttggttctatcatgttgaactgggttatgagctatgctaatagc 11013425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 6847537 - 6847475
Alignment:
Q  39 atgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcaca 101  Q
    |||||| || |||||||||||||| ||||| ||||  ||| ||||||| ||||||||||||||    
T  6847537 atgtttggttcgatcatgttgaaccggattgtgagaaatgtttatagcagccttgttgtcaca 6847475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 42732014 - 42731965
Alignment:
Q  172 caaattccttgggccattgctctaaattcagcttcagcactacttcttgc 221  Q
    |||||||| || || | |||||||||||||||||| ||||||||||||||    
T  42732014 caaattccatgagcgactgctctaaattcagcttcggcactacttcttgc 42731965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 50061113 - 50061064
Alignment:
Q  37 atatgttttgtacgatcatgttgaactggattatgagctatgcttatagc 86  Q
    |||||||| || | ||||||||| |||||||||||||||||||| |||||    
T  50061113 atatgtttggttctatcatgttgcactggattatgagctatgctaatagc 50061064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 25244919 - 25245146
Alignment:
Q  10 tctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcacagtacaatt 109  Q
    |||||||| |||||| |||||||||| |||||||||||||||||||||||||   |||| ||| ||||||||||||| ||||||||||||||            
T  25244919 tctttgataaaatgatgatcgatctcaatatgttttgtacgatcatgttgaatatgattgtgaactatgcttatagcggccttgttgtcaca-------- 25245010  T
Q  110 tcaatgggagttctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattcagcttcagc 209  Q
       |||| ||||||||  ||||||||||||| || |  |||||||||||||||||||||||||||||| |||| | |||||||||||| |||| ||||||    
T  25245011 ---atggaagttctacaactatcttcagttccttcaagactctgagaatccacataccttcacaaatttcttgagtcattgctctaaaatcagtttcagc 25245107  T
Q  210 actacttcttgcaactactccttgttctctgcttctcca 248  Q
    ||||||||||||  |||||| ||||| | ||||||||||    
T  25245108 actacttcttgccgctactcattgttttttgcttctcca 25245146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 1970529 - 1970598
Alignment:
Q  166 ccttcacaaattccttgggccattgctctaaattcagcttcagcactacttcttgcaactactccttgtt 235  Q
    ||||||||||| ||||| |||||||||||||| || ||||| ||||||||| |||| || ||||||||||    
T  1970529 ccttcacaaataccttgagccattgctctaaactcggcttctgcactactttttgctacaactccttgtt 1970598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 56389847 - 56389915
Alignment:
Q  6 cttttctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagc 74  Q
    |||||||||||||||||| | ||| ||||| | ||||||||| | ||||||||| || |||||||||||    
T  56389847 cttttctttgatgaaatgtctatcaatctctacatgttttgttctatcatgttggacaggattatgagc 56389915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 21064474 - 21064526
Alignment:
Q  49 cgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcaca 101  Q
    |||||||||| ||||||||||||  |||| ||||| || ||||||||||||||    
T  21064474 cgatcatgttaaactggattatggactatacttattgcagccttgttgtcaca 21064526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 36074105 - 36074316
Alignment:
Q  22 tgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcacagtacaatttcaatgggagtt 121  Q
    ||||||||||| || ||||||||||| ||||||| |||||||| |||||||||||| ||||| || |||||||||||||| || ||||||||||| ||||    
T  36074105 tgacgatcgatttcaatatgttttgttcgatcatattgaactgaattatgagctatacttattgcggccttgttgtcacaatataatttcaatggaagtt 36074204  T
Q  122 ctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattcagcttcagcactacttcttgc 221  Q
    ||||    ||||| || || ||||| ||||   ||||||| | ||| |||||||||||||||||||||||||||||  |||| || ||||| ||||| ||    
T  36074205 ctactgtcatctttagctcctttagaactcgatgaatccaaagaccctcacaaattccttgggccattgctctaaacgcagcctctgcactgcttctagc 36074304  T
Q  222 aactactccttg 233  Q
    |||||| |||||    
T  36074305 aactacaccttg 36074316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 22615265 - 22615213
Alignment:
Q  169 tcacaaattccttgggccattgctctaaattcagcttcagcactacttcttgc 221  Q
    ||||||||||| || |||| |||||||||||| ||||||||||||||||||||    
T  22615265 tcacaaattccatgagccactgctctaaattcggcttcagcactacttcttgc 22615213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 39745612 - 39745544
Alignment:
Q  6 cttttctttgatgaaatgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagc 74  Q
    |||||||||||||||||| | ||| ||||| | ||||||||| | ||||||||| || |||||||||||    
T  39745612 cttttctttgatgaaatgtctatcaatctctacatgttttgttctatcatgttggacaggattatgagc 39745544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 43765172 - 43765204
Alignment:
Q  39 atgttttgtacgatcatgttgaactggattatg 71  Q
    ||||||||| |||||||||||||||||||||||    
T  43765172 atgttttgttcgatcatgttgaactggattatg 43765204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 18933817 - 18933612
Alignment:
Q  22 tgacgatcgatctcgatatgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcacagtacaatttcaatgggagtt 121  Q
    ||||||| ||| || ||||| || || ||||||||||||||||||||||||||||| ||||| || |||||||||||||| || ||||||||||| ||||    
T  18933817 tgacgattgatttcaatatgcttcgtccgatcatgttgaactggattatgagctatacttattgcggccttgttgtcacaatataatttcaatggaagtt 18933718  T
Q  122 ctacctctatcttcagttcttttagtactctgagaatccacataccttcacaaattccttgggccattgctctaaattcagcttcagcactacttcttgc 221  Q
    ||||    ||||| || || ||||| ||||   ||||||| | ||| ||||||||||||| |||||||||| |||| ||||| || ||||| ||||| ||    
T  18933717 ctactgtcatctttagctcctttagaactcaatgaatccaaagaccctcacaaattccttcggccattgctataaactcagcctctgcactgcttctagc 18933618  T
Q  222 aactac 227  Q
    ||||||    
T  18933617 aactac 18933612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 248
Target Start/End: Complemental strand, 48429119 - 48428923
Alignment:
Q  52 tcatgttgaactggattatgagctatgcttatagctgccttgttgtcacagtacaatttcaatgggagttctacctctatcttcagttcttttagtactc 151  Q
    |||||||||||||| |||||||||||||| ||||| || ||  ||||| |||| || || ||||| || || |  |  ||||| ||||||| ||| ||||    
T  48429119 tcatgttgaactgggttatgagctatgctaatagcggctttactgtcagagtataactttaatggaagctcaattttcatcttaagttcttctaggactc 48429020  T
Q  152 tgagaatccacataccttcacaaattccttgggccattgctctaaattcagcttcagcactacttcttgcaactactccttgttctctgcttctcca 248  Q
    |  | ||||| |  ||||||||||| ||||| ||||| ||||| || |||||||| |||||||||||||| || ||||||||||   ||||||||||    
T  48429019 tatggatccataatccttcacaaataccttgagccatagctctgaactcagcttctgcactacttcttgctacaactccttgtttcttgcttctcca 48428923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 12171874 - 12171836
Alignment:
Q  40 tgttttgtacgatcatgttgaactggattatgagctatg 78  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  12171874 tgttttgttcgatcatgttgaacgggattatgagctatg 12171836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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